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IMGVR_UViG_3300007354_000127-3300007354-Ga0104761_1000005224
Arc-VirIMGVR_UViG_3300007354_000127-3300007354-Ga0104761_1000005224
Identity
- Kingdom:
- archaea
Quality
85.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-105
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 58.0 | 6.50e-01 | 87.4% | 93.3% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 62.0 | 5.97e-01 | 100.0% | 77.1% |
| 3elkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 61.0 | 5.88e-01 | 100.0% | 79.0% |
| 1kyzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 58.0 | 5.70e-01 | 100.0% | 76.7% |
| 4ad9A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 52.0 | 5.51e-01 | 83.2% | 83.3% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 53.0 | 5.25e-01 | 100.0% | 82.5% |
| 3e1sA01 | 1.10.10.2220 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 47.0 | 4.79e-01 | 80.0% | 76.8% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 55.0 | 5.16e-01 | 100.0% | 75.8% |
| 1dp7P00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 48.0 | 5.21e-01 | 96.8% | 100.0% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 51.0 | 5.22e-01 | 100.0% | 92.2% |
| 7jgsG02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 58.0 | 5.73e-01 | 98.9% | 99.0% |
| 2nraC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 46.0 | 4.53e-01 | 90.5% | 99.0% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 32.0 | 3.29e-01 | 88.4% | 56.5% |
| 1ok8A03 | 3.30.387.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3 | 0.55 | 33.0 | 3.59e-01 | 71.6% | 70.4% |
| 4h0nA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 38.0 | 3.04e-01 | 83.2% | 36.0% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.53 | 40.0 | 4.13e-01 | 88.4% | 85.6% |
| 1dfaA03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 45.0 | 4.51e-01 | 98.9% | 96.8% |
| 3iabB01 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.50 | 39.0 | 3.94e-01 | 85.3% | 81.8% |
| 2c7rA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 36.0 | 2.85e-01 | 74.7% | 77.7% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5035685 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.77 | 66.0 | 6.01e-01 | 100.0% | 70.2% |
| 3988732 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.77 | 62.0 | 5.90e-01 | 100.0% | 75.0% |
| 5062643 | 101.1.2.138 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF3860 | 0.76 | 59.0 | 6.39e-01 | 84.2% | 96.2% |
| 5005519 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.75 | 62.0 | 5.86e-01 | 100.0% | 73.7% |
| 4959599 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.74 | 64.0 | 6.00e-01 | 100.0% | 77.2% |
| 5014176 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.74 | 61.0 | 5.10e-01 | 100.0% | 52.5% |
| 4971686 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.74 | 62.0 | 5.98e-01 | 100.0% | 81.0% |
| 4947503 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 62.0 | 5.14e-01 | 100.0% | 53.8% |
| 5045098 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.73 | 59.0 | 6.07e-01 | 100.0% | 90.0% |
| 5050259 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.73 | 62.0 | 4.91e-01 | 100.0% | 47.0% |
| 3718412 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 60.0 | 4.17e-01 | 90.5% | 30.5% |
| 4972556 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 57.0 | 6.00e-01 | 85.3% | 96.5% |
| 4024350 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 64.0 | 5.59e-01 | 100.0% | 70.7% |
| 4201034 | 101.1.2.41 ↗ | alpha arrays › HTH › HTH › winged helix domain › FokI_dom_2 | 0.70 | 63.0 | 5.44e-01 | 100.0% | 84.0% |
| 3414623 | 101.1.2.566 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C | 0.69 | 59.0 | 4.15e-01 | 100.0% | 29.8% |
| 3983446 | 101.1.2.84 ↗ | alpha arrays › HTH › HTH › winged helix domain › CaiF_GrlA | 0.69 | 53.0 | 5.26e-01 | 89.5% | 77.0% |
| 4959456 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.69 | 56.0 | 4.67e-01 | 91.6% | 50.0% |
| 3585425 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.68 | 55.0 | 5.52e-01 | 85.3% | 92.6% |
| 3515741 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 60.0 | 6.08e-01 | 100.0% | 96.8% |
| 4117256 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.68 | 61.0 | 5.43e-01 | 100.0% | 70.8% |
| 3727445 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 53.0 | 5.13e-01 | 89.5% | 76.2% |
| 3469845 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.67 | 59.0 | 4.84e-01 | 100.0% | 61.1% |
| 5041736 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 48.0 | 5.25e-01 | 82.1% | 98.7% |
| 5054274 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 54.0 | 4.26e-01 | 90.5% | 86.3% |
| 4964159 | 101.1.2.205 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF0610-like_N | 0.64 | 50.0 | 5.04e-01 | 83.2% | 100.0% |
| 3232066 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.63 | 46.0 | 3.15e-01 | 77.9% | 74.1% |
| 3507278 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.63 | 57.0 | 4.31e-01 | 100.0% | 43.1% |
| 3552400 | 101.1.2.566 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C | 0.63 | 57.0 | 4.04e-01 | 100.0% | 33.1% |
| 3901071 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.62 | 56.0 | 4.23e-01 | 100.0% | 41.3% |
| 3939681 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.62 | 44.0 | 3.07e-01 | 73.7% | 83.9% |
| 5047334 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 35.0 | 3.59e-01 | 77.9% | 55.8% |
| 4974688 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.60 | 35.0 | 3.95e-01 | 71.6% | 77.1% |
| 3518306 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.60 | 42.0 | 2.97e-01 | 74.7% | 80.0% |
| 5053177 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 52.0 | 4.35e-01 | 100.0% | 65.5% |
| 3803575 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.58 | 33.0 | 4.17e-01 | 87.4% | 98.1% |
| 3214850 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.57 | 43.0 | 2.95e-01 | 80.0% | 83.1% |
| 5064977 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 43.0 | 4.66e-01 | 85.3% | 97.5% |
| 4950064 | 327.16.1.22 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF27275 | 0.57 | 33.0 | 3.73e-01 | 71.6% | 77.1% |
| 4981888 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 35.0 | 3.74e-01 | 74.7% | 75.0% |
| 4938493 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 47.0 | 4.63e-01 | 100.0% | 86.7% |
| 4971398 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.54 | 46.0 | 4.47e-01 | 97.9% | 84.5% |
| 3268663 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.53 | 38.0 | 3.00e-01 | 88.4% | 34.3% |
| 4994902 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.52 | 39.0 | 3.84e-01 | 90.5% | 74.3% |
| 2330240 | 5090.1.1.1 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Flavi_glycoprot | 0.52 | 32.0 | 2.28e-01 | 74.7% | 19.1% |
| 3269973 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.52 | 37.0 | 3.74e-01 | 88.4% | 73.7% |
| 4378054 | 7587.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases | 0.52 | 35.0 | 3.25e-01 | 80.0% | 52.0% |
| 3700015 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 42.0 | 4.04e-01 | 96.8% | 78.2% |
| 4975579 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.52 | 45.0 | 3.89e-01 | 100.0% | 65.2% |
| 3635611 | 328.1.1.3 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 | 0.50 | 38.0 | 3.34e-01 | 81.1% | 70.6% |