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IMGVR_UViG_3300007640_002621-3300007640-Ga0070751_10079871

Arc-Vir

IMGVR_UViG_3300007640_002621-3300007640-Ga0070751_10079871

Quality

73.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-45
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dcmB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 53.0 4.11e-01 100.0% 32.7%
1opcA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 49.0 3.91e-01 100.0% 34.3%
1pvgA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.67 54.0 3.44e-01 93.3% 64.3%
7yh2B01 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.67 47.0 3.25e-01 75.6% 62.7%
1ve3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 48.0 3.11e-01 86.7% 17.0%
2v3aA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 54.0 3.71e-01 95.6% 78.4%
2mnjB00 2.60.40.4160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 50.0 4.06e-01 86.7% 53.4%
2hcuA00 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.64 53.0 3.60e-01 95.6% 89.8%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.64 48.0 3.55e-01 82.2% 42.4%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.63 44.0 3.62e-01 88.9% 39.8%
1m5q102 3.30.310.60 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Like-Sm ribonucleoprotein, C-terminal domain 0.63 45.0 4.18e-01 77.8% 58.6%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.63 49.0 3.81e-01 95.6% 92.5%
1ki1B02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 52.0 3.80e-01 100.0% 51.4%
6bnzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 45.0 3.27e-01 80.0% 35.7%
2mlkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 3.48e-01 100.0% 33.6%
1jc4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 42.0 3.04e-01 75.6% 36.6%
3h5aD01 3.90.930.70 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.61 44.0 3.66e-01 100.0% 42.0%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.60 47.0 4.18e-01 93.3% 73.0%
2cxcA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.60 47.0 4.18e-01 86.7% 79.7%
3rklA00 6.10.140.1640 Special › Helix non-globular › Helix Hairpins › 0.60 42.0 3.53e-01 73.3% 93.8%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 46.0 4.60e-01 97.8% 91.5%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.60 43.0 3.94e-01 84.4% 92.6%
2hjqA01 3.40.5.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain 0.59 39.0 3.93e-01 100.0% 67.4%
1xmtA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 40.0 3.27e-01 75.6% 65.3%
4l3rA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.58 42.0 3.08e-01 82.2% 44.1%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.58 43.0 3.99e-01 86.7% 83.9%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.57 44.0 3.72e-01 100.0% 69.1%
3zi1A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 39.0 2.83e-01 73.3% 27.6%
1w7cA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 3.40e-01 93.3% 68.7%
1ggoA03 3.50.30.10 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Phosphohistidine domain 0.56 41.0 2.95e-01 77.8% 38.2%
1p90A00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.56 38.0 3.02e-01 80.0% 67.5%
4d8mA03 2.100.10.40 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › 0.54 43.0 2.90e-01 95.6% 92.5%
5xrwA00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.54 37.0 3.14e-01 73.3% 68.4%
4h63Q04 3.90.1150.120 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.53 41.0 3.18e-01 93.3% 35.3%
3pgbA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.38e-01 100.0% 80.2%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 37.0 3.38e-01 80.0% 69.6%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.52 42.0 3.11e-01 100.0% 79.4%
1p9oA00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.51 42.0 2.64e-01 95.6% 37.5%
3fzqB01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.50 41.0 2.92e-01 97.8% 70.1%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4464727 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.88 61.0 4.56e-01 100.0% 31.7%
3976442 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.88 62.0 4.71e-01 100.0% 34.0%
4222650 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.85 60.0 4.56e-01 75.6% 34.0%
4680240 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.84 60.0 4.36e-01 100.0% 29.6%
4232905 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.84 59.0 4.33e-01 100.0% 30.3%
4166073 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.84 58.0 4.43e-01 100.0% 33.0%
3988383 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.83 59.0 4.49e-01 100.0% 34.0%
3972517 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.74 50.0 3.85e-01 73.3% 30.3%
5025277 284.1.1.13 a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP-like_N 0.72 52.0 4.92e-01 100.0% 63.6%
3058521 873.1.1.4 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP 0.72 52.0 3.55e-01 77.8% 60.5%
3646933 5.1.4.336 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IP5PC_F 0.71 53.0 3.36e-01 80.0% 38.7%
4977097 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.71 51.0 3.44e-01 75.6% 59.4%
3974509 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.70 49.0 3.84e-01 100.0% 34.0%
3927455 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.69 53.0 3.81e-01 84.4% 82.3%
4943911 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.69 57.0 3.47e-01 93.3% 90.5%
4161299 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.68 48.0 3.78e-01 100.0% 34.0%
3923745 1.1.1.18 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.68 51.0 3.72e-01 82.2% 84.8%
4998157 873.1.1.4 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP 0.68 49.0 3.25e-01 77.8% 59.4%
3480379 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 46.0 3.58e-01 73.3% 58.1%
4345162 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.67 49.0 3.35e-01 82.2% 21.9%
4436288 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.67 47.0 3.51e-01 75.6% 82.7%
3932485 1.1.1.8 beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.65 54.0 4.03e-01 93.3% 93.9%
3691862 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.65 49.0 3.03e-01 84.4% 38.9%
5042199 2003.1.2.300 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.65 55.0 3.30e-01 100.0% 72.1%
3496964 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.64 52.0 3.77e-01 88.9% 81.6%
5041846 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.72e-01 97.8% 89.7%
4963357 304.8.1.124 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › HVO_2525_N 0.64 53.0 3.80e-01 95.6% 61.5%
4938719 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.63 53.0 3.16e-01 100.0% 75.5%
1948911 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.63 49.0 3.83e-01 86.7% 95.0%
None 0.63 53.0 3.47e-01 95.6% 48.5%
1413813 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.62 50.0 4.79e-01 93.3% 90.9%
4020860 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.62 44.0 3.16e-01 75.6% 39.2%
4033493 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.61 49.0 4.66e-01 93.3% 90.9%
4126797 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.61 49.0 4.54e-01 93.3% 83.3%
2639188 211.1.1.7 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.61 42.0 3.79e-01 73.3% 79.1%
4580252 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.60 48.0 4.63e-01 95.6% 92.7%
2875150 3232.1.1.1 alpha arrays › PB2 '627' domain-related › PB2 '627' domain-related › Polymerase basic protein 2 (PB2) '627' domain 0.60 50.0 3.27e-01 93.3% 71.6%
3990000 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.60 48.0 4.62e-01 95.6% 92.7%
3931038 6.1.1.4 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.60 50.0 3.66e-01 100.0% 64.4%
3406047 2.1.1.81 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.60 44.0 3.31e-01 77.8% 53.3%
4054105 2003.1.10.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.59 52.0 4.31e-01 100.0% 90.0%
3479921 11.2.1.39 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › dsrm_Ferlin 0.59 50.0 3.90e-01 95.6% 51.0%
4985478 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 48.0 3.79e-01 100.0% 87.3%
4174179 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.59 47.0 4.58e-01 93.3% 96.0%
5036301 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.58 40.0 4.22e-01 75.6% 82.5%
4281449 2.4.1.3 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.58 42.0 3.12e-01 80.0% 30.5%
5053814 3740.1.1.0 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta 0.58 43.0 2.93e-01 100.0% 19.5%
1070881 9.1.1.26 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF4847 0.58 42.0 3.08e-01 82.2% 43.8%
3735567 1.1.1.6 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease 0.57 45.0 2.96e-01 91.1% 47.1%
3943894 77.1.1.7 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 0.57 47.0 3.53e-01 100.0% 57.6%
3466317 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 38.0 4.22e-01 84.4% 85.7%
5023273 4294.1.1.12 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_Ribbon_TF 0.56 41.0 4.04e-01 93.3% 78.0%
4031645 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.55 36.0 3.59e-01 100.0% 60.0%
4950394 3414.1.1.13 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.55 43.0 3.33e-01 88.9% 47.6%
5075345 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.55 37.0 3.72e-01 91.1% 68.0%
4948064 375.10.1.6 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › Zn_Ribbon_TF 0.54 39.0 3.87e-01 100.0% 76.0%
3945707 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.54 40.0 4.08e-01 100.0% 86.7%
3869151 2.1.1.37 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.54 40.0 2.99e-01 86.7% 61.5%
3738256 2003.1.5.35 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM 0.53 43.0 2.60e-01 91.1% 14.8%
3260511 386.1.1.71 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.52 36.0 3.46e-01 77.8% 60.0%
3178139 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 41.0 2.79e-01 100.0% 60.0%
4205955 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.52 42.0 2.80e-01 95.6% 73.5%
None 0.51 39.0 2.54e-01 100.0% 64.8%
3234524 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 38.0 2.60e-01 84.4% 92.1%