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IMGVR_UViG_3300007640_007785-3300007640-Ga0070751_10118956

Arc-Vir

IMGVR_UViG_3300007640_007785-3300007640-Ga0070751_10118956

Identity

Kingdom:
archaea

Quality

77.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-87
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.67 52.0 4.30e-01 82.4% 56.8%
1ulyA02 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.66 52.0 4.70e-01 100.0% 62.4%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.61 36.0 3.34e-01 71.6% 45.7%
2kuaA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.61 46.0 3.69e-01 81.1% 88.1%
2x6hA03 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.60 49.0 3.74e-01 94.6% 49.5%
4rfsS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.57 47.0 3.55e-01 93.2% 41.7%
3rkgA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.55 46.0 3.64e-01 94.6% 54.9%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.54 35.0 3.36e-01 85.1% 59.0%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.53 46.0 3.65e-01 93.2% 50.3%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.53 38.0 3.82e-01 95.9% 74.3%
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.53 34.0 3.59e-01 100.0% 73.1%
4jocA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 43.0 2.83e-01 100.0% 28.9%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.51 33.0 3.39e-01 86.5% 67.6%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.50 30.0 3.08e-01 87.8% 58.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979047 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 40.0 3.04e-01 90.5% 27.3%
3701556 604.4.1.2 ↗ alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP › T4_Rnl2_C 0.65 52.0 4.73e-01 94.6% 63.8%
4944631 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.64 50.0 4.35e-01 85.1% 100.0%
4946571 2008.1.1.85 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII 0.63 53.0 3.91e-01 95.9% 85.9%
3554386 3755.3.1.309 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Mis12 0.60 45.0 4.04e-01 82.4% 59.0%
3284043 1075.3.1.4 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1+BPD_transp_1_N 0.60 50.0 3.35e-01 94.6% 64.3%
4587250 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.59 53.0 4.67e-01 98.6% 72.4%
3166682 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.59 42.0 3.80e-01 89.2% 55.0%
3303710 3721.1.1.1 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.57 48.0 4.83e-01 93.2% 96.0%
3872677 5089.1.1.12 ↗ beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › BRINP 0.56 38.0 3.36e-01 100.0% 45.2%
3468013 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.54 38.0 3.55e-01 91.9% 56.0%
3289184 2486.1.1.3 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.53 41.0 2.72e-01 83.8% 32.1%
5034052 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.52 41.0 4.18e-01 97.3% 90.0%
3885007 3922.1.1.67 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Val_tRNA-synt_C 0.52 34.0 3.56e-01 97.3% 72.9%
3298752 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.51 39.0 3.42e-01 91.9% 53.9%