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IMGVR_UViG_3300007758_001197-3300007758-Ga0105668_10753321
Arc-VirIMGVR_UViG_3300007758_001197-3300007758-Ga0105668_10753321
Identity
- Kingdom:
- archaea
Quality
92.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-65_176-205
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19276.5 best | HD_assoc_2 | 40.1 | 4.00e-10 | 58.2% | 19.4% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2honB01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.92 | 85.0 | 5.83e-01 | 100.0% | 33.0% |
| 2q14B01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.90 | 84.0 | 6.02e-01 | 98.9% | 39.5% |
| 2id1A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.55 | 34.0 | 3.34e-01 | 100.0% | 54.8% |
| 6j7xA01 | 1.25.40.120 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase | 0.54 | 44.0 | 3.15e-01 | 87.9% | 46.5% |
| 3a1fA00 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.54 | 43.0 | 3.51e-01 | 92.3% | 47.2% |
| 4l9yD00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.52 | 46.0 | 3.36e-01 | 100.0% | 60.0% |
| 3v9pB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 3.44e-01 | 98.9% | 42.6% |
| 3m7vA02 | 3.30.70.1250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phosphopentomutase | 0.51 | 44.0 | 4.09e-01 | 100.0% | 92.6% |
| 2hoeA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 44.0 | 3.83e-01 | 100.0% | 89.0% |
| 3k8pC01 | 1.20.58.1440 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 43.0 | 4.11e-01 | 94.5% | 91.4% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5013151 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.98 | 95.0 | 5.89e-01 | 100.0% | 51.7% |
| 5083274 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.97 | 94.0 | 5.82e-01 | 100.0% | 51.5% |
| 4940288 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.96 | 93.0 | 5.79e-01 | 100.0% | 52.3% |
| 5074639 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.96 | 92.0 | 6.15e-01 | 100.0% | 71.3% |
| 4970001 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.96 | 92.0 | 5.74e-01 | 100.0% | 54.3% |
| 4944327 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.95 | 92.0 | 5.64e-01 | 100.0% | 52.2% |
| 5017390 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.95 | 92.0 | 5.61e-01 | 100.0% | 45.8% |
| 5026206 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.95 | 92.0 | 5.82e-01 | 100.0% | 51.1% |
| 3604550 | 131.1.1.5 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc_2 | 0.95 | 92.0 | 5.75e-01 | 100.0% | 53.2% |
| 5055909 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.95 | 91.0 | 5.79e-01 | 100.0% | 55.1% |
| 5037474 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.95 | 91.0 | 5.63e-01 | 100.0% | 54.3% |
| 5070183 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.95 | 91.0 | 5.67e-01 | 100.0% | 52.0% |
| 4941746 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.94 | 90.0 | 5.64e-01 | 100.0% | 52.8% |
| 5010712 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.93 | 89.0 | 5.58e-01 | 100.0% | 48.2% |
| 4990501 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.93 | 89.0 | 5.37e-01 | 100.0% | 51.3% |
| 4976465 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.93 | 88.0 | 5.47e-01 | 100.0% | 51.8% |
| 5024096 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.92 | 88.0 | 5.46e-01 | 98.9% | 51.0% |
| 321905 | 131.1.1.5 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc_2 | 0.92 | 88.0 | 5.51e-01 | 100.0% | 57.9% |
| 4785 | 131.1.1.5 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc_2 | 0.91 | 87.0 | 5.55e-01 | 100.0% | 51.2% |
| 4951714 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.91 | 87.0 | 5.49e-01 | 100.0% | 53.1% |
| 4955511 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.91 | 86.0 | 5.26e-01 | 100.0% | 48.8% |
| 4987370 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.91 | 86.0 | 5.27e-01 | 100.0% | 47.7% |
| 4418033 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.91 | 86.0 | 5.34e-01 | 100.0% | 55.1% |
| 4956580 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.91 | 87.0 | 5.51e-01 | 100.0% | 54.1% |
| 4558880 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.91 | 85.0 | 5.33e-01 | 100.0% | 54.5% |
| 5045434 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.91 | 86.0 | 5.23e-01 | 100.0% | 48.1% |
| 5063959 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.90 | 85.0 | 5.47e-01 | 100.0% | 51.7% |
| 4932938 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.90 | 86.0 | 5.37e-01 | 100.0% | 53.4% |
| 4800349 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.89 | 66.0 | 4.11e-01 | 76.9% | 50.9% |
| 373351 | 131.1.1.5 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc_2 | 0.89 | 84.0 | 5.19e-01 | 100.0% | 49.2% |
| 5065594 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.87 | 82.0 | 5.08e-01 | 100.0% | 48.0% |
| 5077355 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.87 | 81.0 | 5.08e-01 | 100.0% | 54.6% |
| 5079291 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.86 | 80.0 | 5.46e-01 | 100.0% | 83.1% |
| 5000245 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.86 | 81.0 | 4.93e-01 | 100.0% | 48.0% |
| 4928970 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.85 | 80.0 | 5.03e-01 | 100.0% | 51.1% |
| 4995570 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.84 | 79.0 | 4.94e-01 | 100.0% | 54.9% |
| 3641475 | 131.1.1.5 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc_2 | 0.84 | 79.0 | 4.87e-01 | 100.0% | 48.1% |
| 3810621 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.84 | 78.0 | 4.86e-01 | 100.0% | 49.2% |
| 3305107 | 131.1.1.5 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc_2 | 0.83 | 78.0 | 4.85e-01 | 100.0% | 49.2% |
| 4526572 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.83 | 77.0 | 4.75e-01 | 100.0% | 48.1% |
| 4024140 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.83 | 77.0 | 4.79e-01 | 100.0% | 50.3% |
| 3713574 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.83 | 77.0 | 4.80e-01 | 100.0% | 53.2% |
| 3944361 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.82 | 76.0 | 4.64e-01 | 100.0% | 49.8% |
| 1118688 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.81 | 74.0 | 4.59e-01 | 100.0% | 48.8% |
| 1108429 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.81 | 74.0 | 4.59e-01 | 100.0% | 49.3% |
| 4971620 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.80 | 73.0 | 4.74e-01 | 100.0% | 50.9% |
| 3394914 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.72 | 67.0 | 4.37e-01 | 100.0% | 48.5% |
| 3789439 | 603.1.1.222 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Rbsn | 0.58 | 47.0 | 3.80e-01 | 89.0% | 85.6% |
| 3544035 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 37.0 | 3.38e-01 | 71.4% | 65.6% |
| 3696708 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.52 | 45.0 | 2.91e-01 | 96.7% | 28.5% |
| 3906980 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.51 | 44.0 | 3.52e-01 | 100.0% | 66.5% |
| 3957352 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 39.0 | 3.84e-01 | 93.4% | 77.0% |
D2
medium
residues 68-172_212-233
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19276.5 best | HD_assoc_2 | 47.2 | 2.70e-12 | 87.4% | 47.8% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n28A02 | 3.30.70.2020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 36.0 | 3.92e-01 | 97.6% | 75.5% |
| 1s48A04 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.55 | 33.0 | 3.52e-01 | 100.0% | 67.6% |
| 2ckwA03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.54 | 40.0 | 4.23e-01 | 97.6% | 85.3% |
| 1qr0A01 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.51 | 32.0 | 3.25e-01 | 80.3% | 64.0% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4970001 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.93 | 90.0 | 6.02e-01 | 100.0% | 45.5% |
| 4951714 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.92 | 89.0 | 6.02e-01 | 100.0% | 43.8% |
| 4941746 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.92 | 87.0 | 5.93e-01 | 99.2% | 43.3% |
| 5013151 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.91 | 87.0 | 5.82e-01 | 100.0% | 43.0% |
| 5055909 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.91 | 79.0 | 5.42e-01 | 89.8% | 41.6% |
| 5037358 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.90 | 66.0 | 5.71e-01 | 80.3% | 51.9% |
| 5083274 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.89 | 85.0 | 5.74e-01 | 100.0% | 42.7% |
| 5074639 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.89 | 85.0 | 6.24e-01 | 100.0% | 58.7% |
| 5017390 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.87 | 83.0 | 5.44e-01 | 100.0% | 38.0% |
| 5037474 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.86 | 83.0 | 5.53e-01 | 100.0% | 45.0% |
| 5047046 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.84 | 79.0 | 5.28e-01 | 100.0% | 41.0% |
| 5003911 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.78 | 74.0 | 4.94e-01 | 100.0% | 38.8% |
| 3594680 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.73 | 67.0 | 4.56e-01 | 100.0% | 43.0% |
| 2718745 | 306.3.1.2 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › Img2 | 0.62 | 35.0 | 4.12e-01 | 100.0% | 81.0% |
| 3660941 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.62 | 38.0 | 4.38e-01 | 99.2% | 85.6% |
| 3652712 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.61 | 39.0 | 4.29e-01 | 99.2% | 78.1% |
| 3666412 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.61 | 37.0 | 4.22e-01 | 99.2% | 81.1% |
| 3652757 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.59 | 37.0 | 4.17e-01 | 100.0% | 80.0% |
| 3742672 | 4958.1.1.0 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit | 0.57 | 39.0 | 4.28e-01 | 96.1% | 88.0% |
| 3732593 | 4340.1.1.1 ↗ | a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb5 | 0.54 | 24.0 | 3.42e-01 | 70.1% | 86.2% |
| 3599768 | 108.1.1.44 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › FCaBP_EF-hand | 0.53 | 34.0 | 3.19e-01 | 74.8% | 51.2% |
| 3501936 | 5104.1.1.2 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › CDC45 | 0.52 | 31.0 | 3.54e-01 | 100.0% | 77.9% |
| 3492091 | 5063.1.1.16 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Romo1 | 0.52 | 26.0 | 3.50e-01 | 91.3% | 93.8% |