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IMGVR_UViG_3300007812_000019-3300007812-Ga0105109_10003501
Arc-VirIMGVR_UViG_3300007812_000019-3300007812-Ga0105109_10003501
Identity
- Kingdom:
- archaea
Quality
89.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-212
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.65 | 27.0 | 3.65e-01 | 83.3% | 71.3% |
| 2khdA00 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 25.0 | 3.41e-01 | 84.2% | 65.7% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.61 | 34.0 | 4.44e-01 | 95.1% | 97.3% |
| 3i24B00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.59 | 32.0 | 3.71e-01 | 88.7% | 71.9% |
| 2pgcC01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 28.0 | 3.95e-01 | 84.2% | 94.8% |
| 3bm7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 29.0 | 3.84e-01 | 80.8% | 88.7% |
| 1bp1A01 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.57 | 36.0 | 3.87e-01 | 90.6% | 71.1% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 28.0 | 3.89e-01 | 80.3% | 94.1% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 22.0 | 3.44e-01 | 82.3% | 93.2% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 29.0 | 3.87e-01 | 79.8% | 93.5% |
| 1lq9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 28.0 | 3.62e-01 | 79.3% | 84.8% |
| 2oikA00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.55 | 32.0 | 3.74e-01 | 90.1% | 79.9% |
| 1tz0B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 26.0 | 3.60e-01 | 83.7% | 92.8% |
| 2hngA00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.54 | 26.0 | 3.23e-01 | 72.4% | 72.8% |
| 1xmbA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 26.0 | 3.64e-01 | 80.3% | 94.1% |
| 5byuA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 28.0 | 3.44e-01 | 76.8% | 78.9% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.52 | 28.0 | 3.42e-01 | 96.6% | 78.9% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.52 | 29.0 | 3.71e-01 | 79.8% | 94.1% |
| 4jf8A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.51 | 32.0 | 3.81e-01 | 87.2% | 88.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3285112 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.61 | 36.0 | 3.79e-01 | 91.1% | 62.1% |
| 3504252 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.57 | 24.0 | 3.46e-01 | 88.2% | 82.1% |
| 4652688 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.56 | 27.0 | 3.21e-01 | 74.4% | 65.0% |
| 4237365 | 223.1.1.61 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › SMP_2 | 0.55 | 34.0 | 4.20e-01 | 100.0% | 99.2% |
D2
high
residues 230-294
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3glaA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.68 | 46.0 | 4.04e-01 | 70.8% | 95.9% |
| 1fbnA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.67 | 45.0 | 4.99e-01 | 100.0% | 90.2% |
| 2p1wA01 | 3.30.2430.10 | Alpha Beta › 2-Layer Sandwich › Phosphothreonine lyase fold › phosphothreonine lyase | 0.66 | 54.0 | 3.94e-01 | 90.8% | 72.4% |
| 1dd5A02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.66 | 52.0 | 5.04e-01 | 89.2% | 93.3% |
| 6vudA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.65 | 52.0 | 4.99e-01 | 90.8% | 94.7% |
| 4q7aC02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 51.0 | 4.38e-01 | 93.8% | 96.3% |
| 1wqsA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 47.0 | 4.65e-01 | 96.9% | 78.6% |
| 1lxnA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 51.0 | 4.44e-01 | 93.8% | 84.7% |
| 1ewqA04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.60 | 48.0 | 3.86e-01 | 93.8% | 43.4% |
| 5yk4A04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.60 | 49.0 | 3.91e-01 | 93.8% | 44.1% |
| 6m36O01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.59 | 48.0 | 4.35e-01 | 96.9% | 97.9% |
| 2jbvA04 | 3.30.410.40 | Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › | 0.57 | 44.0 | 3.32e-01 | 86.2% | 97.1% |
| 2fkiA00 | 3.90.1150.30 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.55 | 44.0 | 3.67e-01 | 89.2% | 68.6% |
| 1f3zA00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.54 | 41.0 | 3.25e-01 | 86.2% | 80.7% |
| 6j5tB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 46.0 | 3.83e-01 | 100.0% | 67.5% |
| 3akjA01 | 3.30.200.120 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.53 | 44.0 | 4.29e-01 | 100.0% | 82.4% |
| 3bv8A00 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.53 | 39.0 | 3.66e-01 | 83.1% | 62.4% |
| 2wb6A00 | 3.90.1150.90 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.53 | 39.0 | 3.33e-01 | 81.5% | 89.5% |
| 1wfxA02 | 3.20.170.30 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › | 0.53 | 36.0 | 3.31e-01 | 72.3% | 83.3% |
| 2qziA00 | 3.40.1720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Streptococcus thermophilus LMG 18311 protein like › Streptococcus thermophilus LMG 18311 protein like | 0.53 | 44.0 | 3.93e-01 | 98.5% | 74.3% |
| 1e6vC00 | 3.90.320.20 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › Methyl-coenzyme M reductase, gamma subunit | 0.52 | 36.0 | 2.53e-01 | 75.4% | 46.4% |
| 1hn0A04 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.51 | 42.0 | 3.56e-01 | 98.5% | 82.8% |
| 1qmhA01 | 3.65.10.20 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain | 0.51 | 43.0 | 2.89e-01 | 93.8% | 42.3% |
| 2cm4A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 39.0 | 3.24e-01 | 93.8% | 89.7% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4678749 | 306.1.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB | 0.68 | 52.0 | 5.26e-01 | 87.7% | 84.6% |
| 3234505 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.63 | 54.0 | 3.48e-01 | 96.9% | 20.3% |
| 4927380 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.63 | 52.0 | 3.52e-01 | 93.8% | 80.0% |
| 4285351 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.62 | 50.0 | 3.25e-01 | 92.3% | 18.7% |
| 4515483 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.62 | 51.0 | 3.32e-01 | 93.8% | 19.7% |
| 4378342 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.62 | 50.0 | 3.02e-01 | 92.3% | 12.8% |
| 4969654 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.61 | 50.0 | 3.28e-01 | 92.3% | 20.7% |
| 4109850 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.61 | 50.0 | 3.27e-01 | 93.8% | 20.0% |
| 4181298 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.60 | 49.0 | 3.00e-01 | 92.3% | 13.6% |
| 5030782 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.60 | 47.0 | 4.23e-01 | 87.7% | 77.9% |
| 4088876 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 49.0 | 2.79e-01 | 92.3% | 8.1% |
| 3215057 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.60 | 42.0 | 3.22e-01 | 75.4% | 87.5% |
| 4160947 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.60 | 48.0 | 3.17e-01 | 92.3% | 19.3% |
| None | — | 0.60 | 49.0 | 2.80e-01 | 92.3% | 8.5% | |
| 3270591 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.60 | 49.0 | 3.20e-01 | 93.8% | 19.4% |
| None | — | 0.60 | 49.0 | 2.75e-01 | 95.4% | 7.6% | |
| 4962753 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.59 | 47.0 | 3.09e-01 | 95.4% | 19.7% |
| 4062698 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 47.0 | 2.71e-01 | 95.4% | 8.3% |
| 3246254 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.58 | 41.0 | 3.43e-01 | 73.8% | 76.3% |
| 4278038 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 46.0 | 2.62e-01 | 93.8% | 7.4% |
| 3505928 | 304.103.1.5 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › TM1586_NiRdase | 0.58 | 45.0 | 4.14e-01 | 89.2% | 100.0% |
| 4636696 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.58 | 45.0 | 3.03e-01 | 93.8% | 19.3% |
| 4199223 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.57 | 44.0 | 2.94e-01 | 90.8% | 18.2% |
| 4078587 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.57 | 45.0 | 2.98e-01 | 95.4% | 18.5% |
| 4643746 | 12.1.1.5 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amyl_C2 | 0.57 | 41.0 | 4.05e-01 | 92.3% | 72.9% |
| 4967309 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.57 | 47.0 | 3.82e-01 | 100.0% | 84.6% |
| 3322575 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.56 | 43.0 | 2.93e-01 | 86.2% | 82.6% |
| 5066271 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.56 | 37.0 | 2.88e-01 | 70.8% | 78.8% |
| 3623103 | 864.1.1.3 ↗ | a+b two layers › DLC › DLC › DLC › Ground-like | 0.52 | 41.0 | 4.07e-01 | 100.0% | 82.1% |
| 5024207 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.52 | 43.0 | 3.09e-01 | 95.4% | 68.1% |
| 3618450 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.52 | 36.0 | 3.31e-01 | 76.9% | 69.0% |
| 4402932 | 12.2.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Lyase_8_C | 0.51 | 44.0 | 3.57e-01 | 96.9% | 82.4% |
| 3184926 | 2003.1.5.436 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25, PF27593 | 0.50 | 39.0 | 2.67e-01 | 90.8% | 57.2% |
| 4927237 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.50 | 40.0 | 3.20e-01 | 92.3% | 75.5% |