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IMGVR_UViG_3300007813_000002-3300007813-Ga0105108_10000318

Arc-Vir

IMGVR_UViG_3300007813_000002-3300007813-Ga0105108_10000318

Quality

85.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-117
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xmkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 44.0 4.94e-01 77.1% 86.1%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.64 41.0 4.31e-01 79.0% 71.3%
2kloA00 1.10.10.1420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain 0.63 51.0 4.68e-01 96.2% 67.4%
3oxnA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 30.0 2.95e-01 83.8% 41.7%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 37.0 3.93e-01 73.3% 69.9%
3ssmC02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 41.0 3.29e-01 74.3% 39.3%
3r5gA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.58 40.0 3.24e-01 70.5% 43.6%
5ghrA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.57 46.0 4.39e-01 88.6% 81.6%
1ybtB00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.56 40.0 3.40e-01 73.3% 44.8%
3pcoB04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.56 36.0 4.12e-01 70.5% 89.3%
3f0zA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.56 34.0 3.29e-01 81.0% 52.1%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 33.0 3.70e-01 70.5% 75.0%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.56 42.0 4.66e-01 99.0% 100.0%
1k8kF00 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 48.0 4.23e-01 100.0% 85.6%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.55 34.0 3.42e-01 71.4% 58.6%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 39.0 3.72e-01 73.3% 63.1%
2zy2A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 42.0 3.81e-01 85.7% 62.1%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 34.0 3.49e-01 71.4% 63.1%
1gc5A01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 45.0 3.22e-01 95.2% 53.3%
5t5sA01 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.54 44.0 4.21e-01 93.3% 83.7%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 34.0 3.52e-01 72.4% 67.3%
4je5C00 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.53 44.0 2.85e-01 90.5% 53.9%
1ab8A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 37.0 3.15e-01 73.3% 53.7%
1mw7A03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.53 31.0 3.60e-01 70.5% 81.3%
7ykvB02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.53 44.0 4.50e-01 92.4% 96.0%
2pa8D01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.53 37.0 3.94e-01 87.6% 87.5%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 39.0 3.87e-01 79.0% 77.5%
4obuA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.52 42.0 3.31e-01 99.0% 40.2%
6fyqA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 42.0 3.65e-01 97.1% 55.7%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.50 35.0 3.86e-01 85.7% 91.7%
1tuaA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.50 35.0 3.56e-01 72.4% 80.0%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.50 33.0 3.88e-01 74.3% 100.0%
5eovA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 39.0 3.22e-01 85.7% 52.7%
4ritA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.50 37.0 3.04e-01 92.4% 38.2%
3l4gB03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.50 34.0 3.82e-01 76.2% 98.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990919 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 61.0 6.31e-01 85.7% 94.0%
3786023 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.74 56.0 4.25e-01 84.8% 35.0%
5051554 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 53.0 5.89e-01 84.8% 98.8%
5027998 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.66 41.0 4.43e-01 71.4% 73.3%
3552400 101.1.2.566 alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.64 51.0 3.75e-01 93.3% 31.4%
3841412 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.64 51.0 5.00e-01 97.1% 79.1%
3393722 101.1.2.149 alpha arrays › HTH › HTH › winged helix domain › Costars 0.63 49.0 4.71e-01 86.7% 72.0%
3739985 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.60 53.0 4.70e-01 98.1% 74.2%
5032590 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.57 51.0 4.69e-01 100.0% 80.0%
4067720 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.57 47.0 4.47e-01 93.3% 84.6%
4130263 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.57 50.0 4.68e-01 98.1% 86.9%
5041218 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.57 49.0 4.61e-01 97.1% 89.2%
4377344 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.56 48.0 4.55e-01 96.2% 86.0%
4628908 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.56 49.0 4.55e-01 96.2% 85.4%
3605917 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.56 49.0 3.59e-01 100.0% 43.1%
3982932 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.55 35.0 3.84e-01 70.5% 78.8%
4929747 304.48.1.4 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.55 39.0 3.15e-01 74.3% 40.9%
4284745 304.48.1.22 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.55 39.0 3.74e-01 73.3% 64.2%
4119705 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.55 46.0 4.26e-01 93.3% 79.3%
3953647 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.55 34.0 3.61e-01 73.3% 69.5%
5070287 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.54 45.0 4.30e-01 92.4% 91.2%
3615693 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.54 38.0 3.02e-01 73.3% 41.8%
5055143 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.54 48.0 4.57e-01 98.1% 82.4%
4084506 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.54 46.0 4.33e-01 97.1% 82.2%
3967558 306.6.1.1 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.54 41.0 4.40e-01 98.1% 100.0%
3690773 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 34.0 3.96e-01 91.4% 90.7%
4955639 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.54 33.0 3.96e-01 93.3% 100.0%
4121321 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.54 45.0 4.28e-01 93.3% 86.4%
5034123 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.54 45.0 4.31e-01 93.3% 85.6%
5032113 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.54 45.0 4.29e-01 93.3% 87.2%
4041870 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.53 45.0 4.37e-01 93.3% 87.5%
4856819 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.53 38.0 3.04e-01 74.3% 58.2%
4222901 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.53 44.0 4.25e-01 93.3% 84.0%
4945782 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.53 44.0 4.19e-01 93.3% 88.4%
5044654 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.53 44.0 4.31e-01 94.3% 93.0%
4977126 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.52 45.0 4.33e-01 97.1% 83.3%
5038311 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.52 46.0 4.36e-01 97.1% 87.9%
3387705 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.52 29.0 3.72e-01 91.4% 93.7%
5063456 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.52 36.0 4.12e-01 79.0% 100.0%
4940313 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.52 45.0 4.30e-01 100.0% 80.5%
4610155 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.52 39.0 4.10e-01 99.0% 88.4%
4957627 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.52 44.0 4.27e-01 94.3% 88.7%
3183515 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 44.0 4.05e-01 99.0% 73.1%
4608195 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.51 34.0 3.92e-01 77.1% 96.0%
4033708 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.51 35.0 3.76e-01 78.1% 82.2%
4973866 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.51 35.0 3.80e-01 77.1% 85.9%
3784184 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 36.0 3.32e-01 73.3% 99.3%
2430525 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.51 42.0 4.13e-01 97.1% 82.4%
4498125 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.51 38.0 3.56e-01 96.2% 63.8%
3216101 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 42.0 3.12e-01 89.5% 44.7%
4416214 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.51 38.0 4.08e-01 97.1% 98.8%
3390067 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.51 35.0 3.83e-01 79.0% 88.2%
4988258 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.51 41.0 4.03e-01 92.4% 95.8%
5008984 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.51 35.0 3.78e-01 80.0% 84.4%
4229550 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.51 35.0 3.78e-01 78.1% 87.1%
2067589 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.50 39.0 3.88e-01 94.3% 80.2%
5027716 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.50 35.0 4.00e-01 81.0% 100.0%
4129940 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.50 34.0 3.70e-01 77.1% 85.9%
4498256 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.50 34.0 3.67e-01 75.2% 83.5%
4055520 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.50 34.0 3.70e-01 77.1% 85.9%