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IMGVR_UViG_3300007813_000002-3300007813-Ga0105108_10000319

Arc-Vir

IMGVR_UViG_3300007813_000002-3300007813-Ga0105108_10000319

Quality

91.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-234
PDB
Domain cluster: representative
CATH (67)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mzhA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.73 64.0 6.47e-01 100.0% 93.8%
4nnaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.72 67.0 5.89e-01 100.0% 93.2%
3cu2A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.71 66.0 6.60e-01 100.0% 95.7%
3oa5B02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.70 66.0 5.52e-01 100.0% 97.6%
1kblA04 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.70 66.0 5.70e-01 100.0% 98.2%
2fliC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 61.0 6.32e-01 100.0% 98.2%
1gw1A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.69 65.0 5.44e-01 100.0% 86.7%
5ay7B00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.68 62.0 5.44e-01 95.7% 85.3%
2rdmA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 30.0 4.06e-01 90.5% 76.6%
2eplX02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.68 64.0 5.74e-01 100.0% 99.4%
3qtgA01 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.68 64.0 6.32e-01 100.0% 97.1%
1f8iA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.68 62.0 5.00e-01 97.4% 75.2%
2dskA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.67 63.0 5.73e-01 100.0% 94.7%
4bfaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 63.0 6.21e-01 100.0% 99.6%
7xg9A01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.67 63.0 5.83e-01 100.0% 95.4%
4g56A01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.66 59.0 5.55e-01 94.4% 83.5%
3ayvD00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.66 62.0 6.08e-01 100.0% 95.1%
2xn1A02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 56.0 4.99e-01 90.9% 83.9%
2qezE03 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 61.0 5.57e-01 100.0% 81.6%
1k77A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.64 60.0 5.80e-01 100.0% 99.2%
3krbA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.64 52.0 4.73e-01 99.1% 63.5%
3raoB00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.64 60.0 5.18e-01 100.0% 98.6%
2i9uA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.64 57.0 5.17e-01 94.8% 92.2%
3pfmA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.64 54.0 5.30e-01 97.4% 83.5%
4g9pA01 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.64 60.0 5.55e-01 100.0% 86.4%
1bmtA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.64 36.0 4.34e-01 89.6% 81.6%
1sfjB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.63 59.0 5.90e-01 100.0% 98.3%
4epkB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.63 56.0 4.96e-01 94.4% 93.6%
3lnpA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.63 57.0 5.24e-01 95.7% 92.2%
2gdqA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.63 55.0 5.25e-01 92.6% 89.5%
4ijrA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.63 59.0 5.18e-01 100.0% 84.8%
3nntA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.63 59.0 5.67e-01 100.0% 89.9%
4gieA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.63 59.0 5.43e-01 100.0% 85.1%
3k8kA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 58.0 4.96e-01 100.0% 94.1%
4ub9A02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.62 53.0 4.63e-01 91.3% 96.8%
6sj3B01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.62 55.0 4.88e-01 94.4% 92.9%
3qw3A01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 58.0 5.70e-01 100.0% 93.2%
2p0oA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 57.0 5.76e-01 100.0% 98.7%
3mz2A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.61 53.0 4.92e-01 91.8% 81.8%
2chrA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.60 50.0 5.34e-01 94.8% 100.0%
3v7pA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.60 54.0 4.90e-01 94.4% 93.0%
3rf9B02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 54.0 5.04e-01 96.5% 86.0%
3hv2A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 31.0 4.03e-01 86.6% 86.8%
4py5A02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 27.0 2.97e-01 74.9% 49.2%
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.57 53.0 4.17e-01 100.0% 86.7%
3kcnB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 31.0 3.95e-01 81.4% 86.9%
1jz7A03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 52.0 4.80e-01 100.0% 76.6%
3tbfA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.57 35.0 4.25e-01 97.8% 94.0%
3d0cB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 52.0 4.78e-01 100.0% 76.7%
3tlqA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.55 50.0 4.98e-01 95.7% 94.1%
3do6A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 45.0 4.06e-01 84.4% 72.6%
5mn7A01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.55 37.0 4.18e-01 85.7% 92.1%
4s1wB02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 34.0 4.07e-01 99.1% 94.5%
1fdrA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.54 35.0 4.12e-01 84.0% 94.7%
3cwqA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 40.0 4.21e-01 90.5% 84.9%
1i39A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 25.0 3.02e-01 79.2% 61.3%
4evsA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 37.0 4.22e-01 93.1% 94.2%
3qkwB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 36.0 4.07e-01 79.2% 90.2%
2vptA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 42.0 4.49e-01 90.5% 95.0%
4ltyA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.53 48.0 4.54e-01 99.6% 97.5%
2amlA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.52 31.0 3.76e-01 93.1% 89.1%
3i45A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 37.0 4.12e-01 94.8% 92.2%
7ec2A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 27.0 3.20e-01 81.4% 71.5%
3milB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 40.0 4.00e-01 84.4% 78.2%
3qvoA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 38.0 4.04e-01 90.0% 90.3%
6n8eA04 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 40.0 3.97e-01 83.5% 95.5%
1r1rA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.50 47.0 3.59e-01 100.0% 90.3%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5067003 2002.1.1.236 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHQS 0.72 54.0 5.96e-01 100.0% 94.7%
4007478 2002.1.1.359 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF30390 0.71 67.0 5.35e-01 100.0% 82.8%
4430492 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.70 67.0 4.58e-01 100.0% 46.0%
3265916 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.70 65.0 5.62e-01 100.0% 93.4%
4647013 2002.1.1.89 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_26 0.69 65.0 5.41e-01 100.0% 85.9%
4943304 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.69 62.0 5.45e-01 94.4% 95.1%
3249400 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.68 64.0 5.72e-01 100.0% 99.7%
3822298 2002.1.1.19 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_17 0.68 63.0 5.60e-01 98.7% 97.2%
1854200 2002.1.1.33 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_20 0.68 63.0 5.58e-01 100.0% 96.1%
3964620 2002.1.1.108 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NMO 0.67 63.0 5.29e-01 100.0% 98.9%
4956962 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.67 63.0 5.94e-01 100.0% 92.4%
5031476 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.67 57.0 5.30e-01 90.0% 86.7%
3812402 2002.1.1.19 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_17 0.66 53.0 5.67e-01 100.0% 94.1%
4024787 2002.1.1.189 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRMT5_TIM 0.66 59.0 5.30e-01 95.7% 82.9%
3593400 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.65 61.0 5.54e-01 99.6% 90.5%
4958516 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.65 61.0 5.95e-01 100.0% 97.3%
3219936 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.65 58.0 5.06e-01 96.5% 88.8%
3967205 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.63 53.0 5.18e-01 97.8% 81.2%
377439 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.62 31.0 3.89e-01 75.8% 77.9%
4938417 2002.1.1.83 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 0.61 55.0 4.92e-01 95.2% 89.5%
5079147 2002.1.1.83 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 0.60 55.0 4.88e-01 99.6% 81.1%
3173063 2008.1.1.12 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rad10 0.59 31.0 4.22e-01 81.8% 97.5%
4970339 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.59 54.0 4.85e-01 98.3% 80.6%
5064145 2002.1.1.39 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 0.58 48.0 4.70e-01 100.0% 80.4%
4587774 2006.1.6.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.58 38.0 4.06e-01 85.3% 74.9%
4032237 2007.1.3.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.58 30.0 3.74e-01 76.2% 78.6%
4556622 2002.1.1.121 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C 0.58 53.0 4.82e-01 100.0% 91.7%
5056316 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.58 53.0 4.59e-01 99.6% 83.1%
5012375 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.57 47.0 4.78e-01 87.0% 94.3%
5026080 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.57 52.0 4.84e-01 98.7% 90.0%
5067065 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.57 47.0 4.64e-01 87.4% 89.8%
4971215 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.56 52.0 4.44e-01 99.1% 81.4%
5046893 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.56 33.0 4.17e-01 94.4% 100.0%
5075774 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.56 46.0 4.87e-01 90.0% 98.5%
5042766 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.56 52.0 5.03e-01 100.0% 100.0%
4976404 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 49.0 4.65e-01 93.9% 98.1%
4974794 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.55 39.0 4.46e-01 90.0% 98.2%
4972065 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.55 34.0 3.90e-01 96.1% 81.7%
4957127 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 42.0 4.11e-01 80.5% 90.4%
5064319 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.54 50.0 4.39e-01 99.1% 85.6%
1253168 2007.1.2.13 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 0.54 32.0 4.04e-01 95.7% 98.5%
4995167 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.54 48.0 4.82e-01 95.2% 97.1%
5000765 2006.1.6.15 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.54 47.0 4.78e-01 90.5% 93.7%
3283532 2004.1.1.85 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase 0.52 45.0 4.08e-01 90.9% 98.0%
3263243 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.52 38.0 4.10e-01 96.5% 87.0%
5074908 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.52 30.0 3.55e-01 96.1% 79.3%
5000459 2003.1.6.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.52 37.0 3.98e-01 84.8% 84.0%
178870 2007.5.1.1 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.52 40.0 4.00e-01 84.4% 77.1%
3269867 7579.1.1.14 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.51 45.0 4.31e-01 93.1% 88.3%
3768350 2007.1.3.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.51 34.0 3.89e-01 94.8% 89.4%
None 0.51 41.0 3.82e-01 84.8% 90.0%
3466188 7579.1.1.58 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF829 0.51 41.0 3.88e-01 85.3% 91.4%