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IMGVR_UViG_3300007813_000002-3300007813-Ga0105108_10000323
Arc-VirIMGVR_UViG_3300007813_000002-3300007813-Ga0105108_10000323
Identity
- Kingdom:
- archaea
Quality
80.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 201-274
Domain cluster:
rep: IMGVR_UViG_2022920002_000005-2022920002-YNPsite03_CeleraDRAFT_102290__D16-84
D2
medium
residues 1-76_88-114
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dv8A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 47.0 | 5.23e-01 | 82.5% | 93.6% |
| 2oo2A00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.64 | 34.0 | 3.97e-01 | 94.2% | 72.4% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 45.0 | 4.97e-01 | 74.8% | 98.8% |
| 4z5qA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.63 | 51.0 | 3.56e-01 | 89.3% | 64.5% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.61 | 47.0 | 5.00e-01 | 95.1% | 94.4% |
| 2v1nA01 | 1.10.10.2030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain | 0.61 | 47.0 | 4.77e-01 | 83.5% | 88.1% |
| 6jlzA01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.58 | 48.0 | 4.73e-01 | 94.2% | 85.2% |
| 3o4yA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.58 | 47.0 | 4.66e-01 | 88.3% | 91.8% |
| 2xokP00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.58 | 30.0 | 3.53e-01 | 98.1% | 70.3% |
| 3ihuA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.57 | 50.0 | 4.56e-01 | 100.0% | 98.6% |
| 7lb8B01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.57 | 52.0 | 3.63e-01 | 100.0% | 78.5% |
| 3e70C01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.56 | 46.0 | 4.80e-01 | 100.0% | 96.9% |
| 2sasA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 43.0 | 3.58e-01 | 82.5% | 49.2% |
| 4p9fA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.55 | 47.0 | 4.30e-01 | 99.0% | 98.6% |
| 6yttA01 | 1.10.8.190 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Carbon monoxide dehydrogenase alpha subunit. Chain M, domain 1 | 0.55 | 41.0 | 4.18e-01 | 98.1% | 81.0% |
| 1wu3I00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.54 | 44.0 | 3.84e-01 | 88.3% | 67.7% |
| 7xc2A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 4.07e-01 | 81.6% | 84.9% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.54 | 36.0 | 3.48e-01 | 100.0% | 61.2% |
| 1z6tA05 | 1.25.40.370 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 38.0 | 3.48e-01 | 88.3% | 54.4% |
| 1dxrL02 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.53 | 33.0 | 3.27e-01 | 94.2% | 58.3% |
| 1s1eA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 41.0 | 3.44e-01 | 82.5% | 47.5% |
| 3keyA02 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.53 | 39.0 | 4.18e-01 | 77.7% | 98.9% |
| 2ykgA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.53 | 35.0 | 3.26e-01 | 78.6% | 51.9% |
| 1wteB01 | 1.10.3250.10 | Mainly Alpha › Orthogonal Bundle › type ii restriction endonuclease, domain 1 › type ii restriction endonuclease, domain 1 | 0.53 | 41.0 | 3.74e-01 | 86.4% | 85.0% |
| 1mswD01 | 1.10.1320.10 | Mainly Alpha › Orthogonal Bundle › T7 RNA polymerase; domain 1 › DNA-directed RNA polymerase, N-terminal domain | 0.53 | 41.0 | 3.02e-01 | 85.4% | 52.3% |
| 5tl8A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 45.0 | 2.98e-01 | 96.1% | 68.2% |
| 1h5zA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.50 | 42.0 | 2.91e-01 | 98.1% | 60.8% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4991791 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 65.0 | 6.83e-01 | 88.3% | 100.0% |
| 4019411 | 101.21.1.0 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit | 0.70 | 48.0 | 5.45e-01 | 77.7% | 96.0% |
| 3709824 | 101.21.1.0 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit | 0.66 | 42.0 | 4.92e-01 | 70.9% | 100.0% |
| 5049142 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 58.0 | 5.36e-01 | 99.0% | 93.1% |
| 3734874 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.63 | 41.0 | 4.73e-01 | 72.8% | 97.1% |
| 4973291 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 45.0 | 4.94e-01 | 78.6% | 97.5% |
| 3226202 | 7558.1.1.0 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.61 | 50.0 | 5.14e-01 | 89.3% | 94.0% |
| 3781031 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.60 | 42.0 | 4.09e-01 | 72.8% | 65.2% |
| 3638163 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.60 | 51.0 | 5.12e-01 | 98.1% | 97.2% |
| 3631225 | 101.1.2.596 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7892 | 0.59 | 42.0 | 3.55e-01 | 76.7% | 43.4% |
| 3666424 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 46.0 | 4.37e-01 | 82.5% | 70.0% |
| 3177482 | 101.1.2.124 ↗ | alpha arrays › HTH › HTH › winged helix domain › Kin17_mid | 0.59 | 47.0 | 4.46e-01 | 87.4% | 76.8% |
| 4994575 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.59 | 40.0 | 4.30e-01 | 78.6% | 81.1% |
| 3002491 | 149.1.1.0 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 | 0.58 | 45.0 | 2.98e-01 | 81.6% | 79.2% |
| 4977678 | 192.1.1.50 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › EMC3_TMCO1 | 0.57 | 45.0 | 3.89e-01 | 83.5% | 95.0% |
| 3365155 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.57 | 44.0 | 4.20e-01 | 81.6% | 77.5% |
| 4011331 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.57 | 48.0 | 4.60e-01 | 97.1% | 80.8% |
| 3435414 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.56 | 45.0 | 4.34e-01 | 85.4% | 85.2% |
| 3838172 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.56 | 49.0 | 4.20e-01 | 100.0% | 85.9% |
| 3836863 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.55 | 41.0 | 3.70e-01 | 80.6% | 60.0% |
| 3806870 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.55 | 37.0 | 3.84e-01 | 77.7% | 71.0% |
| 3700116 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 41.0 | 4.10e-01 | 80.6% | 78.2% |
| 4970900 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.55 | 33.0 | 3.49e-01 | 87.4% | 66.7% |
| 3420318 | 604.16.1.0 ↗ | alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain | 0.54 | 47.0 | 4.83e-01 | 99.0% | 98.0% |
| 3671252 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 38.0 | 3.87e-01 | 73.8% | 74.3% |
| 4120139 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.54 | 47.0 | 3.25e-01 | 100.0% | 38.5% |
| 5056945 | 601.18.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 | 0.54 | 46.0 | 4.49e-01 | 94.2% | 85.2% |
| 4973347 | 515.1.1.4 ↗ | alpha arrays › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › EMC3_TMCO1 | 0.53 | 41.0 | 3.47e-01 | 81.6% | 90.0% |
| 3172415 | 101.1.1.122 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUP | 0.53 | 37.0 | 3.74e-01 | 97.1% | 74.0% |
| 3970178 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.53 | 39.0 | 3.49e-01 | 94.2% | 55.2% |
| 3963366 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.50 | 43.0 | 3.45e-01 | 94.2% | 79.0% |
| 3591757 | 4271.1.1.3 ↗ | alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N | 0.50 | 44.0 | 3.34e-01 | 96.1% | 93.1% |
| 3580823 | 601.24.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | 0.50 | 42.0 | 4.25e-01 | 92.2% | 92.4% |
D3
medium
residues 77-87_115-188
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kr6A01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.60 | 40.0 | 3.29e-01 | 70.6% | 98.8% |
| 1l3lA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.57 | 48.0 | 3.87e-01 | 94.1% | 68.8% |
| 7k98E03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.56 | 33.0 | 3.60e-01 | 78.8% | 70.6% |
| 3p9dE01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.56 | 44.0 | 3.16e-01 | 87.1% | 90.9% |
| 1i0rA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 40.0 | 3.33e-01 | 82.4% | 91.9% |
| 2ebbA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.53 | 37.0 | 3.63e-01 | 74.1% | 83.3% |
| 2i44B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.52 | 42.0 | 2.90e-01 | 90.6% | 73.4% |
| 1u02A02 | 3.30.70.1020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 | 0.52 | 37.0 | 3.89e-01 | 89.4% | 81.6% |
| 1dcoA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.51 | 37.0 | 3.53e-01 | 75.3% | 82.8% |
| 1p6rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.56e-01 | 85.9% | 72.0% |
| 2v3sA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 37.0 | 3.63e-01 | 87.1% | 70.8% |
| 1wqsA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 34.0 | 3.66e-01 | 95.3% | 84.3% |
| 3cuqB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 30.0 | 3.27e-01 | 76.5% | 72.5% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944923 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.62 | 46.0 | 4.04e-01 | 80.0% | 59.2% |
| 4608195 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.60 | 37.0 | 3.90e-01 | 82.4% | 69.3% |
| 4927977 | 3662.1.1.0 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related | 0.60 | 37.0 | 3.47e-01 | 84.7% | 48.2% |
| 5047178 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 44.0 | 3.80e-01 | 80.0% | 57.5% |
| 5046689 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 43.0 | 3.84e-01 | 78.8% | 100.0% |
| 3744271 | 3662.1.1.3 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC4 | 0.58 | 36.0 | 3.26e-01 | 83.5% | 45.0% |
| 5037969 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 37.0 | 3.75e-01 | 85.9% | 64.7% |
| 3587913 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.55 | 35.0 | 3.08e-01 | 82.4% | 43.1% |
| 3480216 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 37.0 | 3.15e-01 | 70.6% | 80.0% |
| 3212789 | 382.1.1.17 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › ET | 0.52 | 44.0 | 4.34e-01 | 95.3% | 85.6% |
| 5029522 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.52 | 35.0 | 3.41e-01 | 84.7% | 61.1% |
| 5021499 | 101.1.2.650 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7343 | 0.52 | 36.0 | 3.62e-01 | 89.4% | 71.8% |
| 4945424 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 44.0 | 3.82e-01 | 94.1% | 74.6% |
| 138578 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.51 | 35.0 | 3.43e-01 | 85.9% | 63.5% |
| 3948266 | 223.1.1.67 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE7 | 0.51 | 44.0 | 3.47e-01 | 97.6% | 79.5% |
| 4291473 | 327.11.2.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 | 0.51 | 45.0 | 4.29e-01 | 100.0% | 91.9% |
| 3951206 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.50 | 36.0 | 3.76e-01 | 77.6% | 97.5% |
| 3907468 | 382.1.1.2 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP | 0.50 | 34.0 | 3.53e-01 | 95.3% | 75.0% |