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IMGVR_UViG_3300007816_000024-3300007816-Ga0105112_10000391
Arc-VirIMGVR_UViG_3300007816_000024-3300007816-Ga0105112_10000391
Identity
- Kingdom:
- archaea
Quality
70.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-62
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 54.0 | 4.48e-01 | 100.0% | 47.6% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 55.0 | 4.80e-01 | 100.0% | 60.0% |
| 2xigA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 55.0 | 4.76e-01 | 100.0% | 89.0% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.64 | 54.0 | 4.98e-01 | 100.0% | 76.7% |
| 2e9xB02 | 1.20.58.1020 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 40.0 | 3.27e-01 | 100.0% | 32.1% |
| 1nklA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.62 | 53.0 | 4.74e-01 | 100.0% | 73.1% |
| 1d5rA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.61 | 51.0 | 3.69e-01 | 100.0% | 47.1% |
| 3bf7A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.61 | 47.0 | 3.08e-01 | 98.1% | 18.4% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.59 | 41.0 | 3.51e-01 | 88.9% | 44.8% |
| 2b0cA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 40.0 | 3.89e-01 | 75.9% | 66.7% |
| 2e2oA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 42.0 | 3.08e-01 | 83.3% | 58.3% |
| 4n1vA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.57 | 43.0 | 3.65e-01 | 83.3% | 93.5% |
| 1j5sA02 | 1.10.2020.10 | Mainly Alpha › Orthogonal Bundle › uronate isomerase, domain 2, chain A › uronate isomerase, domain 2, chain A | 0.57 | 39.0 | 3.46e-01 | 75.9% | 83.5% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 3.80e-01 | 100.0% | 58.7% |
| 2khvA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.51 | 42.0 | 3.74e-01 | 100.0% | 98.8% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3401721 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 53.0 | 5.27e-01 | 100.0% | 81.8% |
| 3932960 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 54.0 | 4.80e-01 | 100.0% | 61.3% |
| 3598778 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.67 | 57.0 | 5.33e-01 | 100.0% | 80.0% |
| 5008720 | 101.1.1.548 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 | 0.67 | 50.0 | 4.80e-01 | 94.4% | 69.2% |
| 4031678 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.66 | 59.0 | 5.58e-01 | 100.0% | 95.4% |
| 4972323 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.66 | 56.0 | 3.55e-01 | 100.0% | 19.7% |
| 5003693 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 49.0 | 4.69e-01 | 94.4% | 69.2% |
| 3269159 | 101.1.1.89 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_7 | 0.65 | 51.0 | 5.16e-01 | 100.0% | 89.1% |
| 5007660 | 101.1.1.187 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 | 0.64 | 50.0 | 4.79e-01 | 94.4% | 72.3% |
| 3901880 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 47.0 | 4.49e-01 | 96.3% | 67.7% |
| 3230169 | 101.1.1.264 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SPK | 0.63 | 52.0 | 4.15e-01 | 98.1% | 50.8% |
| 3609939 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.63 | 50.0 | 4.15e-01 | 100.0% | 47.6% |
| 3448788 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.62 | 46.0 | 3.32e-01 | 83.3% | 26.3% |
| 4072567 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 49.0 | 4.65e-01 | 96.3% | 72.9% |
| 3267034 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 45.0 | 4.59e-01 | 100.0% | 90.0% |
| 3233535 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 52.0 | 4.63e-01 | 98.1% | 81.2% |
| 3484726 | 101.1.2.416 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_Egal | 0.61 | 52.0 | 4.64e-01 | 100.0% | 72.5% |
| 3621586 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 46.0 | 4.64e-01 | 98.1% | 85.5% |
| 2491473 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 49.0 | 4.25e-01 | 100.0% | 58.2% |
| 3411866 | 3919.1.1.0 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 | 0.60 | 50.0 | 3.95e-01 | 100.0% | 44.0% |
| 3620102 | 5067.1.1.3 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched | 0.59 | 46.0 | 2.58e-01 | 90.7% | 57.7% |
| 3233735 | 101.1.1.264 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SPK | 0.59 | 48.0 | 4.36e-01 | 96.3% | 80.0% |
| 3337333 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.59 | 50.0 | 3.37e-01 | 100.0% | 67.0% |
| 3260484 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.58 | 43.0 | 4.32e-01 | 98.1% | 85.5% |
| 3404323 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.58 | 48.0 | 4.03e-01 | 98.1% | 87.0% |
| 5051282 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.57 | 42.0 | 4.14e-01 | 100.0% | 76.7% |
| 3177022 | 3873.1.1.1 ↗ | a+b two layers › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › HGTP_anticodon2 | 0.56 | 48.0 | 3.68e-01 | 100.0% | 41.9% |
| 3739094 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 47.0 | 4.47e-01 | 96.3% | 81.5% |
| 3598217 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 42.0 | 3.81e-01 | 92.6% | 63.5% |
| 4468962 | 101.1.1.46 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_2 | 0.53 | 43.0 | 4.17e-01 | 100.0% | 83.1% |
| 4956455 | 4163.1.2.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like | 0.52 | 37.0 | 3.18e-01 | 98.1% | 43.0% |