IMGVR_UViG_3300007953_000071-3300007953-Ga0105738_10003551

Arc-Vir

Identity

83.8 mean pLDDT

View cluster (3 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-93

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00986.27 best	DNA_gyraseB_C	62.1	6.20e-17	51.6%	49.2%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3m4iA02	3.30.1490.440	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 ›	0.84	77.0	7.51e-01	98.4%	94.1%
3nuhB02	3.30.300.370	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 ›	0.77	54.0	4.32e-01	74.2%	98.3%
3glkA03	3.30.1490.20	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain	0.69	44.0	4.56e-01	71.0%	69.5%
5aj3F00	3.30.70.60	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B	0.57	45.0	3.67e-01	91.9%	44.7%
1wh2A01	3.30.1490.40	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain	0.57	36.0	3.64e-01	72.6%	63.9%
2jxtA01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.51	41.0	3.95e-01	100.0%	96.1%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3964707	2006.1.3.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain	0.82	74.0	4.91e-01	100.0%	27.0%
3738773	822.1.1.1 ↗	a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF	0.58	40.0	4.16e-01	71.0%	80.0%

D2 medium residues 1-26_96-126

PDB

Domain cluster: rep: IMGVR_UViG_3300028137_001220-3300028137-Ga0256412_10053771__D14-66

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00986.27 best	DNA_gyraseB_C	32.2	1.30e-07	70.2%	49.2%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1wtyA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.56	46.0	3.84e-01	100.0%	84.5%
6izcA00	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.51	43.0	2.79e-01	94.7%	61.2%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3964707	2006.1.3.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain	0.94	87.0	5.59e-01	100.0%	54.8%
None	—		0.93	85.0	5.47e-01	100.0%	54.9%
4124102	2006.1.3.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain	0.92	84.0	5.38e-01	100.0%	52.9%
None	—		0.92	84.0	5.38e-01	100.0%	51.0%
4406660	2006.1.3.1 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim	0.90	82.0	5.28e-01	100.0%	51.2%
4100838	2006.1.3.1 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim	0.86	79.0	5.13e-01	100.0%	53.6%
3971266	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.62	53.0	4.20e-01	100.0%	85.6%