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IMGVR_UViG_3300007985_000016-3300007985-Ga0100381_100023210

Arc-Vir

IMGVR_UViG_3300007985_000016-3300007985-Ga0100381_100023210

Quality

85.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-126
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01743.27 best PolyA_pol 75.8 5.50e-21 95.2% 96.0%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1miwA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.87 78.0 7.56e-01 100.0% 86.6%
3aqlA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.86 75.0 7.19e-01 100.0% 80.7%
1ou5A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.82 74.0 7.06e-01 100.0% 82.9%
3h37A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.76 69.0 6.50e-01 100.0% 81.4%
2w9mB03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.75 41.0 4.92e-01 71.0% 81.5%
3wfoA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.68 63.0 5.81e-01 100.0% 84.1%
1r89A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 49.0 4.88e-01 100.0% 83.6%
1f5aA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 48.0 4.39e-01 83.9% 89.1%
2fclA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.59 53.0 4.91e-01 100.0% 89.7%
4pavB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 34.0 3.37e-01 73.4% 53.4%
4wqkA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.56 49.0 4.45e-01 99.2% 84.6%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 37.0 4.28e-01 83.9% 94.4%
4mymA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 34.0 3.23e-01 74.2% 50.3%
3gaaB00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.54 38.0 3.09e-01 71.8% 76.9%
2j4xA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 25.0 3.23e-01 91.9% 79.2%
1vj7B02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 35.0 3.64e-01 71.0% 79.8%
3ozbA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.50 37.0 3.09e-01 79.0% 94.6%
3fcdB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 37.0 3.81e-01 75.8% 88.2%
3nxpA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 34.0 3.08e-01 70.2% 98.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4178903 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.93 85.0 8.64e-01 98.4% 97.5%
3387559 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.91 86.0 8.04e-01 100.0% 84.1%
4555762 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.90 85.0 8.21e-01 100.0% 90.4%
3585073 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.88 84.0 7.61e-01 100.0% 85.0%
4051670 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.88 84.0 8.00e-01 100.0% 89.3%
3947616 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.88 84.0 7.45e-01 100.0% 82.4%
4052877 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.88 84.0 7.98e-01 100.0% 89.3%
3839787 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.87 83.0 7.82e-01 100.0% 89.0%
3950526 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.87 83.0 7.47e-01 100.0% 83.1%
3960020 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.86 82.0 7.31e-01 100.0% 80.6%
3487128 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.86 82.0 7.57e-01 100.0% 85.3%
3599086 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.85 81.0 7.26e-01 100.0% 90.9%
3203362 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.85 80.0 6.80e-01 100.0% 91.6%
4037081 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.85 80.0 6.94e-01 100.0% 86.7%
4021217 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.84 80.0 6.97e-01 100.0% 90.9%
4944306 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.82 78.0 6.83e-01 100.0% 73.7%
3338562 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.79 75.0 6.41e-01 100.0% 73.0%
4495995 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.78 68.0 6.73e-01 100.0% 87.7%
4156614 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.76 68.0 6.62e-01 100.0% 85.9%
4146108 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.75 61.0 6.37e-01 100.0% 92.2%
1824581 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.75 71.0 6.41e-01 100.0% 82.0%
3652670 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.73 69.0 5.98e-01 100.0% 83.3%
3231877 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.68 63.0 5.51e-01 100.0% 73.7%
4583055 316.1.1.11 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB 0.67 50.0 4.62e-01 100.0% 60.6%
5030443 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.65 53.0 5.22e-01 100.0% 81.5%
5069373 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.60 49.0 4.79e-01 98.4% 78.5%
4140035 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.60 51.0 4.86e-01 100.0% 77.9%
5010658 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.60 50.0 4.85e-01 100.0% 81.5%
3280391 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.60 33.0 4.16e-01 70.2% 94.3%
4998245 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.60 55.0 5.06e-01 99.2% 79.4%
4982804 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.59 49.0 4.54e-01 97.6% 70.3%
5041512 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.59 31.0 4.05e-01 76.6% 95.4%
5054759 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.59 47.0 4.51e-01 96.8% 74.3%
5076310 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.59 53.0 4.90e-01 100.0% 78.1%
5051950 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.58 41.0 3.81e-01 71.8% 100.0%
4948009 316.1.1.81 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › tRNA_NucTransf2 0.58 48.0 4.48e-01 97.6% 72.7%
5737 211.1.1.21 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › At5g48480-like_N 0.57 27.0 3.66e-01 73.4% 90.0%
4930190 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.57 48.0 4.58e-01 98.4% 77.9%
3592525 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 23.0 2.52e-01 71.8% 40.9%
5000046 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.56 48.0 4.61e-01 100.0% 80.0%
3955662 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.56 48.0 4.28e-01 94.4% 81.7%
3285469 316.1.1.21 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit 0.55 49.0 4.30e-01 100.0% 76.2%
3700803 316.1.1.30 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PAP_NTPase 0.54 49.0 4.32e-01 97.6% 76.0%
4984763 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.53 47.0 4.06e-01 100.0% 87.3%
3910119 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 41.0 3.70e-01 81.5% 82.9%
4957215 316.1.1.23 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb 0.51 46.0 4.19e-01 100.0% 90.6%
3807215 2007.5.1.20 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase,PMR5N 0.51 38.0 2.90e-01 79.8% 73.1%
3579313 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.51 34.0 3.68e-01 75.0% 84.0%
D2 medium residues 278-365
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.62 42.0 4.32e-01 83.0% 71.8%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.61 35.0 3.56e-01 77.3% 57.6%
2kp7A01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.60 36.0 3.90e-01 81.8% 70.3%
1tfkB00 1.20.120.650 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Colicin D 0.56 46.0 4.65e-01 100.0% 91.9%
3fedA03 1.20.930.40 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Transferrin receptor-like, dimerisation domain 0.56 40.0 3.37e-01 75.0% 94.2%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 32.0 3.35e-01 85.2% 62.8%
3llkA01 1.20.120.1960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain 0.54 44.0 4.28e-01 100.0% 79.6%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 37.0 3.43e-01 72.7% 90.1%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.53 36.0 3.41e-01 70.5% 83.6%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 33.0 3.46e-01 81.8% 70.4%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 45.0 4.06e-01 100.0% 94.3%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4876272 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.61 40.0 3.94e-01 81.8% 61.9%
3805432 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.59 52.0 4.31e-01 100.0% 63.0%
3263599 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.57 50.0 4.16e-01 100.0% 64.4%
5029982 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.55 40.0 2.94e-01 79.5% 95.0%
4350232 141.1.1.3 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA 0.54 38.0 2.78e-01 77.3% 57.3%
5049171 633.6.1.1 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.52 39.0 2.92e-01 83.0% 67.2%
3943353 3831.1.1.0 alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 0.51 37.0 3.70e-01 89.8% 75.6%
4994051 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.50 43.0 3.96e-01 97.7% 71.7%