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IMGVR_UViG_3300007985_000017-3300007985-Ga0100381_100027551
Arc-VirIMGVR_UViG_3300007985_000017-3300007985-Ga0100381_100027551
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 41-133
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2opjA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 29.0 | 3.01e-01 | 71.0% | 51.2% |
| 1ir3A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 36.0 | 3.65e-01 | 72.0% | 95.8% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3164979 | 3856.1.2.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta | 0.85 | 56.0 | 5.73e-01 | 75.3% | 70.0% |
| 2581318 | 3856.1.2.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta | 0.85 | 49.0 | 5.92e-01 | 75.3% | 84.6% |
| 4393394 | 3856.1.2.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta | 0.84 | 54.0 | 6.39e-01 | 93.5% | 93.8% |
| 2512672 | 3856.1.2.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta | 0.84 | 54.0 | 6.31e-01 | 73.1% | 91.0% |
| 3251055 | 3856.1.2.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta | 0.82 | 54.0 | 6.21e-01 | 93.5% | 90.0% |
| 2485645 | 3856.1.2.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta | 0.82 | 53.0 | 5.44e-01 | 74.2% | 69.3% |
| 4859120 | 3856.1.2.0 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain | 0.75 | 54.0 | 5.36e-01 | 97.8% | 71.4% |
| 2409669 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.61 | 55.0 | 3.59e-01 | 100.0% | 23.9% |
| 4178403 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.55 | 36.0 | 3.76e-01 | 88.2% | 71.8% |
| 5018052 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.53 | 44.0 | 3.34e-01 | 93.5% | 63.3% |
| 3916009 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 42.0 | 3.45e-01 | 90.3% | 83.7% |
| 3671474 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.51 | 44.0 | 3.09e-01 | 98.9% | 82.0% |
| 4016981 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 42.0 | 3.19e-01 | 95.7% | 75.8% |
D2
medium
residues 144-258_324-345
Domain cluster:
representative
D3
medium
residues 259-323
Domain cluster:
representative
D4
medium
residues 346-412
Domain cluster:
representative
D5
medium
residues 413-542
Domain cluster:
rep: NC_019516.2__YP_007006093.1__F417_gp132__00105__D215-316
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16190.12 best | E1_FCCH | 39.5 | 6.40e-10 | 54.6% | 77.1% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v31A01 | 2.40.30.180 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain | 0.79 | 51.0 | 5.92e-01 | 91.5% | 88.7% |
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.68 | 39.0 | 4.95e-01 | 90.0% | 100.0% |
| 6ijfC01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.64 | 36.0 | 4.15e-01 | 93.1% | 75.3% |
| 4xotA03 | 2.40.30.250 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.61 | 39.0 | 4.50e-01 | 91.5% | 95.3% |
| 2d9rA00 | 2.40.30.100 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like | 0.59 | 38.0 | 4.53e-01 | 90.0% | 100.0% |
| 2gpjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 42.0 | 4.78e-01 | 89.2% | 100.0% |
| 4mtmA01 | 2.60.40.3940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 35.0 | 3.98e-01 | 89.2% | 83.3% |
| 4dxzA00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 35.0 | 3.73e-01 | 90.8% | 72.1% |
| 4es8B02 | 2.60.40.3580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 36.0 | 4.01e-01 | 80.8% | 86.1% |
| 1tdqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 32.0 | 3.71e-01 | 78.5% | 87.8% |
| 2bpa200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 39.0 | 3.65e-01 | 81.5% | 98.3% |
| 3l5iA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 31.0 | 3.66e-01 | 80.8% | 87.5% |
| 2vrsA03 | 2.60.90.40 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.51 | 37.0 | 3.76e-01 | 89.2% | 75.8% |
| 3zugB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.51 | 43.0 | 4.21e-01 | 90.8% | 96.5% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 199114 | 1.1.7.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH | 0.79 | 51.0 | 5.54e-01 | 91.5% | 76.8% |
| 1030933 | 1.1.7.29 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › End_beta_barrel | 0.74 | 50.0 | 5.97e-01 | 90.0% | 100.0% |
| 4028468 | 1.1.7.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH | 0.70 | 55.0 | 6.15e-01 | 92.3% | 100.0% |
| 4890345 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.69 | 43.0 | 5.12e-01 | 92.3% | 94.1% |
| 4943639 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 43.0 | 5.10e-01 | 90.0% | 100.0% |
| 1890446 | 1.1.7.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th | 0.66 | 48.0 | 5.25e-01 | 94.6% | 92.4% |
| 4429352 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 43.0 | 5.04e-01 | 93.1% | 95.6% |
| 3387360 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 41.0 | 4.97e-01 | 96.2% | 100.0% |
| 4173804 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 41.0 | 4.82e-01 | 87.7% | 98.9% |
| 1113011 | 1.1.7.52 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HK620_9_C | 0.61 | 38.0 | 4.57e-01 | 90.0% | 100.0% |
| 4510320 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.61 | 40.0 | 4.73e-01 | 86.2% | 97.8% |
| 3287262 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.60 | 45.0 | 4.91e-01 | 96.2% | 97.1% |
| 3783623 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.58 | 43.0 | 4.83e-01 | 87.7% | 100.0% |
| 4992085 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.57 | 38.0 | 4.44e-01 | 92.3% | 97.8% |
| 4001758 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.56 | 41.0 | 3.79e-01 | 76.9% | 81.8% |
| 3935249 | 11.1.1.955 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_4th | 0.54 | 35.0 | 3.92e-01 | 80.0% | 86.0% |
| 4846224 | 929.1.1.2 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin › PCSK9_C1 | 0.53 | 32.0 | 3.65e-01 | 90.0% | 86.4% |
| 3518287 | 4.1.1.347 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 | 0.52 | 37.0 | 3.92e-01 | 73.1% | 99.1% |
| 4389184 | 11.1.1.1065 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF25971 | 0.52 | 32.0 | 3.53e-01 | 82.3% | 76.2% |
| 3183322 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.52 | 42.0 | 3.58e-01 | 90.0% | 93.3% |
| 3595571 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 31.0 | 3.56e-01 | 76.9% | 85.6% |
| 3251337 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 34.0 | 3.42e-01 | 80.0% | 65.2% |
D6
medium
residues 543-643
Domain cluster:
rep: IMGVR_UViG_3300031650_000024-3300031650-Ga0315539_10037828__D311-401