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IMGVR_UViG_3300007985_000035-3300007985-Ga0100381_100056021

Arc-Vir

IMGVR_UViG_3300007985_000035-3300007985-Ga0100381_100056021

Identity

Kingdom:
archaea

Quality

85.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 54-105_141-165
PDB
Domain cluster: rep: GU075905.1__ADO99793.1__PHM2_015__00015__D35-99
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2djpA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.78 54.0 5.45e-01 75.3% 71.4%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.74 47.0 5.56e-01 72.7% 100.0%
2cpjA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.63 41.0 3.75e-01 81.8% 50.5%
2cpdA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.63 38.0 3.91e-01 75.3% 62.7%
7csxA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 42.0 4.36e-01 75.3% 75.0%
2cphA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 40.0 4.03e-01 70.1% 65.8%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 48.0 4.61e-01 85.7% 90.9%
7wezA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 39.0 3.98e-01 70.1% 68.0%
2cpeA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 40.0 3.90e-01 72.7% 71.8%
1whwA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 40.0 3.79e-01 81.8% 59.6%
3sluB01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 4.26e-01 88.3% 92.3%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.78e-01 75.3% 86.8%
2ctkA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 33.0 3.02e-01 100.0% 43.3%
4iiwA01 3.30.1490.480 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Endolytic murein transglycosylase 0.54 39.0 3.92e-01 81.8% 76.3%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.54 37.0 3.83e-01 74.0% 90.4%
2mkcA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 42.0 3.72e-01 88.3% 89.8%
1sw2A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 44.0 3.53e-01 97.4% 64.5%
2ctfA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 31.0 2.87e-01 100.0% 43.1%
7cpxA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 36.0 2.33e-01 74.0% 59.3%
1rlhA02 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.51 39.0 3.61e-01 83.1% 76.2%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 3.22e-01 70.1% 80.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004560 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 60.0 7.10e-01 75.3% 100.0%
3587382 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 59.0 6.85e-01 74.0% 100.0%
4177991 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 58.0 6.76e-01 75.3% 100.0%
3331840 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.82 57.0 6.60e-01 77.9% 100.0%
3250125 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.82 56.0 6.13e-01 74.0% 84.6%
2809236 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 57.0 6.31e-01 72.7% 96.8%
4468802 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.81 54.0 5.43e-01 77.9% 67.1%
4995817 101.15.1.4 ↗ alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 0.81 70.0 7.31e-01 96.1% 100.0%
3846469 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 55.0 5.21e-01 80.5% 60.0%
3413453 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 51.0 6.19e-01 75.3% 100.0%
3349612 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.80 51.0 6.21e-01 77.9% 100.0%
3517460 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 54.0 6.30e-01 79.2% 98.2%
4249176 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 55.0 6.21e-01 83.1% 91.7%
1758716 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 52.0 6.20e-01 71.4% 100.0%
3898121 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 55.0 6.37e-01 81.8% 100.0%
162111 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.78 54.0 5.45e-01 75.3% 71.4%
2047861 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.78 57.0 6.45e-01 77.9% 100.0%
3691772 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.78 52.0 6.04e-01 75.3% 96.4%
1832368 101.15.1.4 ↗ alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 0.77 70.0 5.15e-01 100.0% 78.8%
3452845 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.77 53.0 6.19e-01 76.6% 100.0%
3969916 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.77 58.0 6.07e-01 88.3% 87.1%
2124917 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.76 57.0 4.35e-01 80.5% 37.3%
3166029 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.76 51.0 5.91e-01 75.3% 98.2%
3966498 101.15.1.3 ↗ alpha arrays › HTH › LysM domain › LysM domain › Phage_tail_X 0.75 53.0 5.72e-01 74.0% 87.7%
4491522 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.75 50.0 5.54e-01 75.3% 88.3%
3604763 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.75 48.0 4.69e-01 72.7% 60.0%
3711427 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.75 48.0 5.09e-01 72.7% 73.9%
3698672 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.74 48.0 4.30e-01 72.7% 48.6%
2895417 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.74 51.0 5.17e-01 72.7% 72.7%
4069716 101.15.1.14 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 0.71 54.0 4.63e-01 80.5% 51.7%
3365578 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.71 55.0 5.46e-01 81.8% 85.0%
3375189 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.71 54.0 5.65e-01 80.5% 97.1%
3641672 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.71 54.0 5.50e-01 81.8% 82.7%
3819870 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.71 54.0 4.42e-01 80.5% 46.7%
3671032 101.15.1.11 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_NFP 0.70 53.0 4.12e-01 80.5% 38.8%
3651054 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.70 53.0 4.17e-01 80.5% 43.2%
3381619 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.68 57.0 3.81e-01 90.9% 84.0%
3963519 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.68 49.0 5.25e-01 76.6% 89.2%
3647286 101.15.1.7 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM_RLK 0.64 51.0 5.15e-01 85.7% 98.7%
4180515 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.64 43.0 4.91e-01 70.1% 100.0%
3585157 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.64 38.0 4.17e-01 81.8% 72.3%
3990074 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.60 47.0 4.35e-01 89.6% 88.6%
3682464 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.59 35.0 3.64e-01 100.0% 64.3%
388408 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.53 37.0 3.30e-01 74.0% 54.2%
4564454 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.53 37.0 3.40e-01 72.7% 61.9%
3588444 3536.1.1.1 ↗ a+b complex topology › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › YceG 0.52 37.0 3.85e-01 81.8% 82.9%
4335697 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 40.0 3.34e-01 84.4% 48.9%
3706605 101.1.2.119 ↗ alpha arrays › HTH › HTH › winged helix domain › Tau95 0.51 35.0 2.51e-01 71.4% 28.6%
3291393 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.51 36.0 3.26e-01 76.6% 57.4%
3282573 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.50 37.0 3.26e-01 81.8% 56.0%