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IMGVR_UViG_3300008002_000067-3300008002-Ga0100390_1000200619
Arc-VirIMGVR_UViG_3300008002_000067-3300008002-Ga0100390_1000200619
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 265-343
Domain cluster:
representative
CATH (74)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6tdyD01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.72 | 60.0 | 6.18e-01 | 98.7% | 98.7% |
| 2lp6A00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.71 | 64.0 | 6.12e-01 | 100.0% | 96.7% |
| 2dpyA00 | 3.40.50.12240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.71 | 59.0 | 3.74e-01 | 100.0% | 17.5% |
| 3lnnA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.71 | 62.0 | 5.92e-01 | 98.7% | 100.0% |
| 1krhA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.71 | 62.0 | 5.84e-01 | 98.7% | 99.0% |
| 4tkoB01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.69 | 62.0 | 5.90e-01 | 100.0% | 95.7% |
| 4kbxA01 | 2.40.37.30 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › | 0.69 | 59.0 | 4.22e-01 | 100.0% | 32.3% |
| 1qfjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.69 | 61.0 | 5.83e-01 | 98.7% | 96.7% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.68 | 59.0 | 5.81e-01 | 96.2% | 100.0% |
| 2f1lA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.67 | 61.0 | 5.87e-01 | 100.0% | 95.5% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.67 | 57.0 | 5.79e-01 | 97.5% | 100.0% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.67 | 59.0 | 5.40e-01 | 100.0% | 94.2% |
| 2greF02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.66 | 57.0 | 5.81e-01 | 94.9% | 100.0% |
| 1aw8B00 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.66 | 50.0 | 4.85e-01 | 82.3% | 74.7% |
| 5tr9A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.66 | 58.0 | 5.46e-01 | 100.0% | 99.0% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.66 | 51.0 | 4.67e-01 | 86.1% | 75.2% |
| 3u28C00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.65 | 57.0 | 5.48e-01 | 100.0% | 84.8% |
| 2eixA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.65 | 57.0 | 5.19e-01 | 98.7% | 94.3% |
| 1l1jA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 48.0 | 4.30e-01 | 87.3% | 55.1% |
| 3op1A02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.64 | 56.0 | 5.02e-01 | 98.7% | 74.8% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.63 | 57.0 | 4.72e-01 | 100.0% | 60.1% |
| 5hmaA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.63 | 48.0 | 4.69e-01 | 88.6% | 75.9% |
| 3cb0D00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 50.0 | 4.02e-01 | 89.9% | 79.5% |
| 2qggA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.62 | 53.0 | 5.07e-01 | 100.0% | 91.4% |
| 3zn6A02 | 2.60.40.3410 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 51.0 | 5.00e-01 | 94.9% | 97.7% |
| 3dtdD00 | 2.60.40.1880 | Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein | 0.61 | 51.0 | 4.27e-01 | 94.9% | 57.9% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 42.0 | 4.17e-01 | 72.2% | 79.5% |
| 6hhuA01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 47.0 | 4.76e-01 | 89.9% | 89.7% |
| 2fqpA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 41.0 | 3.89e-01 | 100.0% | 60.0% |
| 4gklA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 45.0 | 4.44e-01 | 98.7% | 76.1% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 41.0 | 4.41e-01 | 73.4% | 86.4% |
| 1imhC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 50.0 | 4.62e-01 | 100.0% | 82.1% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 40.0 | 4.52e-01 | 70.9% | 94.9% |
| 2e3vA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 51.0 | 4.69e-01 | 100.0% | 78.6% |
| 5os9A00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.58 | 48.0 | 4.37e-01 | 97.5% | 85.2% |
| 2hrvA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 44.0 | 4.17e-01 | 83.5% | 74.7% |
| 1mi8A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.57 | 40.0 | 3.34e-01 | 73.4% | 97.2% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 46.0 | 4.42e-01 | 94.9% | 76.0% |
| 2ra1A04 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 47.0 | 4.46e-01 | 98.7% | 79.4% |
| 2eqkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 41.0 | 4.29e-01 | 100.0% | 83.6% |
| 3etbL00 | 2.60.40.810 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 49.0 | 4.09e-01 | 100.0% | 67.1% |
| 3lzqA00 | 2.60.40.2480 | Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type | 0.56 | 47.0 | 3.85e-01 | 96.2% | 89.2% |
| 2vrsA03 | 2.60.90.40 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.55 | 47.0 | 4.05e-01 | 98.7% | 72.0% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 4.04e-01 | 70.9% | 82.4% |
| 3h7lA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 46.0 | 4.46e-01 | 97.5% | 88.2% |
| 2dlgA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 4.17e-01 | 91.1% | 82.5% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 42.0 | 4.25e-01 | 100.0% | 81.2% |
| 3cxeC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 47.0 | 4.45e-01 | 100.0% | 88.8% |
| 2b5iB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 45.0 | 4.26e-01 | 96.2% | 77.7% |
| 4pbxA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 47.0 | 4.54e-01 | 100.0% | 85.9% |
| 3c7fA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 47.0 | 3.96e-01 | 100.0% | 56.3% |
| 6grsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 46.0 | 4.36e-01 | 96.2% | 85.3% |
| 4mypA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 36.0 | 3.25e-01 | 70.9% | 99.2% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.53 | 42.0 | 3.74e-01 | 88.6% | 64.2% |
| 4pqqA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 46.0 | 3.71e-01 | 97.5% | 91.0% |
| 3hnmA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 46.0 | 3.70e-01 | 100.0% | 49.7% |
| 1tdqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 46.0 | 4.46e-01 | 100.0% | 88.9% |
| 2kd7A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 45.0 | 3.68e-01 | 100.0% | 49.1% |
| 3r8qA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 45.0 | 4.36e-01 | 100.0% | 85.6% |
| 5mj6A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 42.0 | 4.24e-01 | 98.7% | 87.5% |
| 2n1kA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 44.0 | 4.09e-01 | 100.0% | 71.7% |
| 1eerC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 45.0 | 4.24e-01 | 97.5% | 82.5% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 38.0 | 4.21e-01 | 100.0% | 96.8% |
| 2blfA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 44.0 | 4.05e-01 | 100.0% | 73.7% |
| 2j1aA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 44.0 | 3.79e-01 | 100.0% | 60.3% |
| 3ntkA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 37.0 | 3.73e-01 | 100.0% | 72.5% |
| 5k3xA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 45.0 | 4.07e-01 | 100.0% | 73.5% |
| 2xtsA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 44.0 | 3.84e-01 | 100.0% | 66.9% |
| 4bfeC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.56e-01 | 83.5% | 94.3% |
| 2w1sA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 43.0 | 3.70e-01 | 100.0% | 61.2% |
| 4d0qA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 44.0 | 3.53e-01 | 100.0% | 48.4% |
| 2ee3A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 43.0 | 4.00e-01 | 100.0% | 73.1% |
| 3r8qA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 41.0 | 3.97e-01 | 100.0% | 82.6% |
| 5z0uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 42.0 | 3.73e-01 | 100.0% | 75.0% |
ECOD (90)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5078307 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.91 | 83.0 | 8.55e-01 | 96.2% | 100.0% |
| 4194551 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.79 | 66.0 | 6.76e-01 | 100.0% | 94.7% |
| 4026674 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.78 | 69.0 | 6.96e-01 | 100.0% | 96.2% |
| 4060574 | 1.1.7.70 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II | 0.77 | 63.0 | 6.52e-01 | 87.3% | 100.0% |
| 3712506 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 69.0 | 6.78e-01 | 100.0% | 91.8% |
| 3597282 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.76 | 68.0 | 6.87e-01 | 100.0% | 97.5% |
| 4162532 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.76 | 63.0 | 6.49e-01 | 100.0% | 96.0% |
| 3967745 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.76 | 65.0 | 6.64e-01 | 100.0% | 98.7% |
| 4319764 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.75 | 64.0 | 5.77e-01 | 100.0% | 67.3% |
| 4403870 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.75 | 62.0 | 5.88e-01 | 100.0% | 75.8% |
| 3945528 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 67.0 | 6.72e-01 | 100.0% | 97.5% |
| 3171334 | 1.1.7.102 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 | 0.74 | 65.0 | 5.86e-01 | 98.7% | 98.2% |
| 2161972 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 65.0 | 6.42e-01 | 100.0% | 92.8% |
| 4973665 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 54.0 | 5.33e-01 | 77.2% | 77.6% |
| 1567470 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.73 | 63.0 | 5.94e-01 | 94.9% | 93.8% |
| 4519111 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.73 | 67.0 | 6.46e-01 | 100.0% | 93.3% |
| 4990333 | 3613.1.1.0 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain | 0.73 | 58.0 | 4.76e-01 | 84.8% | 91.4% |
| 3262455 | 1.1.7.90 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 | 0.73 | 65.0 | 5.98e-01 | 97.5% | 100.0% |
| 4060133 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.73 | 67.0 | 6.37e-01 | 100.0% | 95.6% |
| 1790393 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 64.0 | 6.35e-01 | 100.0% | 93.9% |
| 4203993 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.73 | 67.0 | 6.25e-01 | 100.0% | 89.5% |
| 3226149 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 65.0 | 5.73e-01 | 100.0% | 93.9% |
| 4444484 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.72 | 65.0 | 6.01e-01 | 100.0% | 95.0% |
| 4452870 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.72 | 66.0 | 6.34e-01 | 100.0% | 94.4% |
| 4946268 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 63.0 | 5.92e-01 | 96.2% | 96.8% |
| 4429352 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 64.0 | 6.19e-01 | 100.0% | 86.7% |
| 4063137 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.72 | 66.0 | 6.28e-01 | 100.0% | 94.4% |
| 4016867 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 65.0 | 5.72e-01 | 100.0% | 94.8% |
| 5029749 | 1.1.7.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae | 0.72 | 64.0 | 6.17e-01 | 98.7% | 97.8% |
| 4391995 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.72 | 65.0 | 6.40e-01 | 98.7% | 96.5% |
| 3596642 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 62.0 | 6.08e-01 | 100.0% | 89.4% |
| 3574784 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 65.0 | 5.77e-01 | 100.0% | 90.0% |
| 2389026 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.71 | 64.0 | 5.93e-01 | 100.0% | 98.0% |
| 5056905 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.71 | 62.0 | 5.98e-01 | 97.5% | 100.0% |
| 3801941 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.71 | 58.0 | 5.17e-01 | 91.1% | 91.3% |
| 4976915 | 1.1.7.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae | 0.71 | 63.0 | 5.86e-01 | 98.7% | 89.8% |
| 5026244 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 62.0 | 5.96e-01 | 97.5% | 96.7% |
| 3997045 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.71 | 61.0 | 5.81e-01 | 97.5% | 100.0% |
| 3970513 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.71 | 63.0 | 6.20e-01 | 98.7% | 100.0% |
| 4980136 | 1.1.7.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae | 0.70 | 62.0 | 6.00e-01 | 97.5% | 96.6% |
| 4521518 | 1.1.7.121 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Phage_BR0599 | 0.70 | 64.0 | 5.61e-01 | 100.0% | 80.9% |
| 4138546 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.70 | 64.0 | 6.16e-01 | 100.0% | 94.4% |
| 4453032 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.70 | 63.0 | 5.81e-01 | 100.0% | 95.0% |
| 5074909 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 60.0 | 5.88e-01 | 97.5% | 97.7% |
| 5075955 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 61.0 | 5.88e-01 | 97.5% | 96.6% |
| 4087903 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.70 | 63.0 | 6.03e-01 | 100.0% | 96.7% |
| 4069807 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.70 | 62.0 | 5.77e-01 | 100.0% | 97.0% |
| 2855773 | 1.1.7.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae | 0.69 | 61.0 | 5.33e-01 | 100.0% | 72.4% |
| 5024264 | 3613.1.1.0 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain | 0.69 | 54.0 | 5.52e-01 | 83.5% | 92.0% |
| 4854964 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.69 | 61.0 | 5.95e-01 | 100.0% | 90.7% |
| 3969656 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.69 | 59.0 | 5.72e-01 | 96.2% | 100.0% |
| 5000971 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 60.0 | 5.73e-01 | 96.2% | 97.8% |
| 4038119 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 60.0 | 4.88e-01 | 98.7% | 77.3% |
| 4399542 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.68 | 62.0 | 5.94e-01 | 100.0% | 94.4% |
| 2642985 | 1.1.7.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae | 0.67 | 58.0 | 5.69e-01 | 97.5% | 100.0% |
| 4347919 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.66 | 59.0 | 5.66e-01 | 100.0% | 90.0% |
| 4214180 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.65 | 57.0 | 5.42e-01 | 100.0% | 89.5% |
| 127 | 1.1.7.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase | 0.65 | 56.0 | 5.08e-01 | 100.0% | 71.6% |
| 4163756 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.63 | 54.0 | 5.15e-01 | 100.0% | 91.6% |
| 3822637 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 54.0 | 5.09e-01 | 100.0% | 84.2% |
| 4519252 | 1.1.7.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase | 0.61 | 52.0 | 4.66e-01 | 98.7% | 74.8% |
| 1005556 | 10.2.1.65 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › VP17_central_barrel | 0.61 | 50.0 | 4.91e-01 | 94.9% | 96.6% |
| 3265575 | 11.1.1.698 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 | 0.60 | 50.0 | 4.92e-01 | 100.0% | 87.1% |
| 3263988 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 51.0 | 5.01e-01 | 96.2% | 88.2% |
| 3511056 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.60 | 54.0 | 4.04e-01 | 100.0% | 74.9% |
| 3824346 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 46.0 | 4.66e-01 | 100.0% | 82.5% |
| 3423337 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.60 | 47.0 | 4.69e-01 | 100.0% | 83.7% |
| 3303889 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.59 | 46.0 | 4.75e-01 | 100.0% | 89.3% |
| 3818428 | 4.1.1.66 ↗ | beta barrels › SH3 › SH3 › SH3 › LBR_tudor | 0.59 | 45.0 | 4.64e-01 | 100.0% | 86.7% |
| 3254695 | 11.1.1.802 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 | 0.59 | 49.0 | 4.71e-01 | 100.0% | 81.1% |
| 3367984 | 11.1.1.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Expansin_C | 0.58 | 46.0 | 4.24e-01 | 96.2% | 65.7% |
| 5051788 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.58 | 48.0 | 4.36e-01 | 96.2% | 67.6% |
| 4346055 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.57 | 50.0 | 3.70e-01 | 100.0% | 37.7% |
| 4015142 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 49.0 | 4.63e-01 | 98.7% | 81.0% |
| 3251940 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.57 | 39.0 | 4.06e-01 | 72.2% | 84.0% |
| 3249113 | 11.1.1.698 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 | 0.56 | 48.0 | 4.60e-01 | 97.5% | 85.3% |
| 3261993 | 11.1.1.843 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 | 0.56 | 47.0 | 4.27e-01 | 98.7% | 86.1% |
| 5032873 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 49.0 | 4.44e-01 | 100.0% | 82.7% |
| 3934764 | 11.1.1.835 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Irg-7 | 0.55 | 47.0 | 4.15e-01 | 97.5% | 80.8% |
| 3885324 | 11.1.1.260 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG_2 | 0.55 | 47.0 | 4.32e-01 | 98.7% | 86.7% |
| 3258964 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 44.0 | 4.30e-01 | 94.9% | 86.7% |
| 4945485 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 46.0 | 4.41e-01 | 98.7% | 88.4% |
| 4978001 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 3.85e-01 | 98.7% | 86.4% |
| 3487188 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 45.0 | 4.46e-01 | 97.5% | 88.2% |
| 3259959 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 4.21e-01 | 100.0% | 80.0% |
| 4500385 | 10.32.1.2 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C | 0.52 | 44.0 | 3.78e-01 | 100.0% | 58.6% |
| 4086703 | 11.1.1.994 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30427 | 0.52 | 44.0 | 4.17e-01 | 98.7% | 84.0% |
| 3247872 | 11.1.1.843 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 | 0.52 | 43.0 | 3.86e-01 | 100.0% | 79.2% |
| 5009953 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.52 | 46.0 | 3.41e-01 | 100.0% | 39.5% |
| 3572806 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 41.0 | 4.01e-01 | 100.0% | 81.1% |
D2
medium
residues 29-52_74-157_365-401
Domain cluster:
rep: IMGVR_UViG_3300002120_000098-3300002120-C687J26616_100029157__D29-50_74-150_259-304
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03864.23 best | Phage_cap_E | 31.1 | 1.90e-07 | 78.6% | 25.9% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bqwA01 | 3.15.30.10 | Alpha Beta › Super Roll › putative capsid protein of prophage fold › putative capsid protein of prophage domain like | 0.77 | 72.0 | 6.28e-01 | 100.0% | 87.1% |
| 1ohgA01 | 3.30.2400.10 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 | 0.70 | 66.0 | 6.60e-01 | 99.3% | 97.9% |
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.68 | 34.0 | 4.05e-01 | 79.3% | 69.0% |
| 3lnlB02 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 29.0 | 3.67e-01 | 81.4% | 64.8% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.66 | 29.0 | 3.59e-01 | 89.0% | 63.4% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 30.0 | 3.68e-01 | 86.2% | 66.7% |
| 7k0xA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 27.0 | 3.56e-01 | 79.3% | 67.9% |
| 1lp9E02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 26.0 | 3.45e-01 | 89.7% | 65.0% |
| 6i9gA01 | 3.30.2400.30 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › | 0.65 | 58.0 | 5.47e-01 | 100.0% | 81.1% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 30.0 | 3.58e-01 | 79.3% | 62.4% |
| 3dktA01 | 3.30.2400.30 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › | 0.65 | 58.0 | 5.46e-01 | 100.0% | 81.1% |
| 1jw3A00 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.64 | 34.0 | 3.48e-01 | 97.9% | 51.4% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.63 | 29.0 | 3.52e-01 | 86.2% | 63.5% |
| 5t89X05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 31.0 | 3.61e-01 | 81.4% | 63.6% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.63 | 29.0 | 3.56e-01 | 80.0% | 68.6% |
| 3o4oB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 29.0 | 3.35e-01 | 80.7% | 57.8% |
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.61 | 57.0 | 4.45e-01 | 100.0% | 87.2% |
| 3go9A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.61 | 33.0 | 2.90e-01 | 90.3% | 34.1% |
| 1y7pB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 27.0 | 3.48e-01 | 89.0% | 72.5% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 25.0 | 3.21e-01 | 77.2% | 67.1% |
| 6ofsA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.58 | 33.0 | 3.08e-01 | 91.0% | 42.4% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.58 | 36.0 | 3.68e-01 | 84.8% | 60.8% |
| 1vr4E00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.58 | 36.0 | 4.34e-01 | 98.6% | 96.8% |
| 1b7yB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.56 | 27.0 | 3.39e-01 | 78.6% | 74.4% |
| 2ednA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 27.0 | 3.04e-01 | 89.0% | 57.6% |
| 4i6yA02 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.54 | 30.0 | 3.32e-01 | 90.3% | 66.4% |
| 7l0jB01 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.54 | 24.0 | 2.95e-01 | 77.2% | 62.9% |
| 3gtyX02 | 3.10.50.30 | Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain | 0.53 | 30.0 | 3.73e-01 | 94.5% | 94.0% |
| 6iomB01 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.51 | 22.0 | 2.83e-01 | 81.4% | 68.8% |
| 3qw9B00 | 2.60.40.4100 | Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain | 0.51 | 32.0 | 3.07e-01 | 91.0% | 54.8% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.50 | 24.0 | 3.35e-01 | 77.9% | 100.0% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2640765 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.82 | 77.0 | 5.64e-01 | 100.0% | 90.1% |
| 2443966 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.78 | 73.0 | 5.15e-01 | 100.0% | 80.2% |
| 5080806 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.73 | 69.0 | 5.39e-01 | 100.0% | 95.1% |
| 5041371 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.71 | 67.0 | 5.07e-01 | 100.0% | 91.0% |
| 4988094 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.70 | 67.0 | 5.40e-01 | 100.0% | 86.7% |
| 1877546 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.70 | 66.0 | 5.09e-01 | 100.0% | 87.3% |
| 3963274 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.70 | 63.0 | 4.61e-01 | 95.9% | 92.1% |
| 3946670 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.70 | 66.0 | 5.22e-01 | 100.0% | 83.3% |
| 2651377 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.69 | 65.0 | 5.01e-01 | 100.0% | 85.5% |
| 4313471 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.69 | 65.0 | 4.98e-01 | 100.0% | 82.7% |
| 2989506 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.67 | 64.0 | 4.92e-01 | 100.0% | 87.8% |
| 3075730 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.66 | 62.0 | 4.69e-01 | 100.0% | 83.8% |
| 4955362 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.66 | 62.0 | 5.20e-01 | 100.0% | 89.7% |
| 3615945 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.66 | 30.0 | 3.68e-01 | 82.8% | 64.9% |
| 3583655 | 2485.3.1.5 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 | 0.66 | 62.0 | 4.66e-01 | 100.0% | 87.5% |
| 2989340 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.65 | 61.0 | 4.67e-01 | 100.0% | 82.9% |
| 3224621 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.65 | 30.0 | 3.97e-01 | 92.4% | 81.3% |
| 4031028 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.65 | 60.0 | 4.78e-01 | 100.0% | 78.6% |
| 4929755 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.65 | 61.0 | 4.81e-01 | 100.0% | 84.7% |
| 2538948 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.64 | 60.0 | 4.65e-01 | 100.0% | 84.6% |
| 4934117 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.64 | 27.0 | 3.49e-01 | 89.7% | 65.9% |
| 4991535 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.64 | 60.0 | 4.94e-01 | 100.0% | 86.1% |
| 4006695 | 309.1.1.4 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C | 0.62 | 34.0 | 3.10e-01 | 89.7% | 38.9% |
| 3701983 | 304.153.1.0 ↗ | a+b two layers › Alpha-beta plaits › Collagenase G catalytic helper subdomain › Collagenase G catalytic helper subdomain | 0.62 | 41.0 | 3.90e-01 | 90.3% | 56.0% |
| 2553816 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.62 | 58.0 | 4.65e-01 | 100.0% | 83.8% |
| 3952452 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.61 | 56.0 | 4.45e-01 | 100.0% | 84.0% |
| 3892414 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.61 | 26.0 | 3.05e-01 | 90.3% | 54.0% |
| 3931456 | 304.42.1.1 ↗ | a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC | 0.58 | 36.0 | 3.47e-01 | 84.8% | 52.4% |
| 4082913 | 304.42.1.1 ↗ | a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC | 0.58 | 36.0 | 3.54e-01 | 86.2% | 55.6% |
| 5013821 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.57 | 36.0 | 3.89e-01 | 93.1% | 74.2% |
| 3633972 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.57 | 31.0 | 3.59e-01 | 86.9% | 71.4% |
| 3497426 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 33.0 | 3.65e-01 | 90.3% | 72.2% |
| 3496210 | 11.12.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like | 0.56 | 34.0 | 3.19e-01 | 91.0% | 45.9% |
| 3210590 | 304.160.1.3 ↗ | a+b two layers › Alpha-beta plaits › Gas vesicle protein GvpF › Gas vesicle protein GvpF › PF28298 | 0.52 | 34.0 | 3.50e-01 | 86.9% | 68.9% |
D3
medium
residues 158-264_344-364_402-418
Domain cluster:
rep: NC_062753.1__YP_010357483.1__M1M31_gp41__00041__D163-291_335-364
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pk8A00 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.79 | 51.0 | 6.22e-01 | 87.6% | 100.0% |
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.78 | 74.0 | 5.69e-01 | 100.0% | 58.4% |
| 1ohgA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.77 | 54.0 | 6.32e-01 | 98.6% | 100.0% |
| 6xgpB01 | 3.30.1930.10 | Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain | 0.68 | 60.0 | 6.24e-01 | 95.2% | 100.0% |
| 3bqwA02 | 3.30.1930.10 | Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain | 0.66 | 59.0 | 6.13e-01 | 97.9% | 99.3% |
| 1yueA03 | 3.30.2320.40 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.66 | 52.0 | 5.70e-01 | 98.6% | 98.3% |
| 4htlA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 32.0 | 3.77e-01 | 70.3% | 77.0% |
| 1ygyB03 | 3.30.1330.90 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 | 0.56 | 42.0 | 4.30e-01 | 89.0% | 80.6% |
| 2wsdA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.53 | 39.0 | 3.65e-01 | 100.0% | 61.3% |
| 2iafA00 | 3.30.1330.90 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 | 0.52 | 44.0 | 4.52e-01 | 90.3% | 98.6% |
| 1szlA01 | 2.20.100.10 | Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat | 0.52 | 21.0 | 3.22e-01 | 97.2% | 100.0% |
| 2rb9A01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.51 | 35.0 | 3.54e-01 | 82.8% | 68.8% |
| 6lpnA03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 31.0 | 3.42e-01 | 92.4% | 74.6% |
| 7xhzA01 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.50 | 30.0 | 3.20e-01 | 95.2% | 65.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 333200 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.80 | 77.0 | 5.82e-01 | 100.0% | 59.4% |
| 11367 | 2485.3.1.6 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › ENCP4 | 0.79 | 51.0 | 6.22e-01 | 87.6% | 100.0% |
| 4988094 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.72 | 67.0 | 5.41e-01 | 97.9% | 60.4% |
| 3965498 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.72 | 67.0 | 5.01e-01 | 98.6% | 54.3% |
| 2443966 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.68 | 62.0 | 4.48e-01 | 100.0% | 51.1% |
| 3942344 | 2485.3.1.19 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 | 0.66 | 61.0 | 4.71e-01 | 97.9% | 52.5% |
| 2989372 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.65 | 61.0 | 4.64e-01 | 97.9% | 53.3% |
| 2989363 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.64 | 59.0 | 4.54e-01 | 98.6% | 54.5% |
| 2831773 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.64 | 55.0 | 4.42e-01 | 97.9% | 49.6% |
| 3949155 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.63 | 59.0 | 4.70e-01 | 97.9% | 57.0% |
| 3598134 | 301.7.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like | 0.57 | 34.0 | 4.03e-01 | 76.6% | 88.4% |
| 5081698 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.56 | 51.0 | 3.98e-01 | 98.6% | 55.1% |
| 5082861 | 298.3.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › SDH_beta | 0.56 | 43.0 | 4.65e-01 | 93.1% | 96.7% |
| 6782 | 298.3.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter | 0.56 | 42.0 | 4.32e-01 | 89.0% | 83.0% |
| 4952805 | 298.3.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter | 0.55 | 41.0 | 4.23e-01 | 89.0% | 83.0% |
| 4973985 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.54 | 40.0 | 4.25e-01 | 88.3% | 85.4% |
| 5023980 | 298.3.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter | 0.54 | 39.0 | 4.17e-01 | 89.0% | 83.8% |
| 4426322 | 2485.1.1.6 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FHIPEP | 0.54 | 28.0 | 3.24e-01 | 70.3% | 66.4% |
| 4047126 | 298.3.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter | 0.54 | 40.0 | 4.25e-01 | 89.0% | 86.2% |
| 4137825 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.54 | 34.0 | 4.08e-01 | 81.4% | 100.0% |
| 4033759 | 298.3.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter | 0.53 | 40.0 | 4.17e-01 | 89.7% | 84.4% |
| 4987039 | 298.3.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter | 0.53 | 39.0 | 4.11e-01 | 89.0% | 83.0% |
| 4957693 | 298.3.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter | 0.53 | 39.0 | 4.07e-01 | 89.0% | 82.2% |
| 4020211 | 7590.1.1.0 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs | 0.52 | 33.0 | 3.31e-01 | 76.6% | 62.8% |
| 3818002 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.51 | 36.0 | 4.05e-01 | 93.8% | 95.5% |