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IMGVR_UViG_3300008002_000783-3300008002-Ga0100390_1000229517

Arc-Vir

IMGVR_UViG_3300008002_000783-3300008002-Ga0100390_1000229517

Quality

73.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-32
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e07A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.72 48.0 3.48e-01 93.8% 24.4%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 54.0 3.60e-01 100.0% 65.2%
3fvyA03 3.30.70.2600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 52.0 4.18e-01 100.0% 46.7%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.65 49.0 3.50e-01 84.4% 28.0%
3g2mB01 6.20.160.20 Special › Other non-globular › HSP40/DNAj peptide-binding domain › 0.65 46.0 4.13e-01 71.9% 46.9%
1kf6A04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.64 47.0 4.64e-01 93.8% 74.3%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 45.0 3.29e-01 81.2% 24.5%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.64 44.0 3.53e-01 75.0% 49.3%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.63 43.0 3.15e-01 96.9% 24.0%
4dmzA02 3.30.70.2880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 46.0 3.15e-01 100.0% 20.4%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.62 43.0 3.44e-01 75.0% 48.1%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 44.0 3.15e-01 78.1% 22.5%
1vlrA01 3.30.200.40 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain 0.61 43.0 3.24e-01 81.2% 86.7%
4zg5A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.61 48.0 2.95e-01 100.0% 35.2%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 45.0 2.69e-01 100.0% 20.7%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 49.0 3.16e-01 100.0% 30.3%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 47.0 3.09e-01 93.8% 34.5%
4ns4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 46.0 2.76e-01 93.8% 19.9%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.20e-01 93.8% 23.6%
3viqA00 6.10.140.1020 Special › Helix non-globular › Helix Hairpins › 0.59 41.0 2.88e-01 87.5% 21.3%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 39.0 3.33e-01 100.0% 73.3%
1dw9A02 3.30.1160.10 Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain 0.59 39.0 3.59e-01 100.0% 64.7%
3c0wA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 41.0 3.08e-01 100.0% 31.7%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.59 40.0 3.03e-01 75.0% 25.0%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 43.0 3.07e-01 90.6% 27.3%
4hstA01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.58 44.0 2.91e-01 96.9% 15.9%
5x8tT00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.58 41.0 2.77e-01 75.0% 59.7%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 45.0 3.16e-01 100.0% 48.9%
4gs5A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.58 40.0 3.18e-01 100.0% 35.2%
5oomJ01 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.58 42.0 3.65e-01 93.8% 87.9%
2c4kA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 42.0 2.71e-01 84.4% 26.9%
1ym5A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 44.0 3.00e-01 100.0% 75.3%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.58 40.0 2.48e-01 78.1% 67.2%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 43.0 3.11e-01 96.9% 54.8%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.56 39.0 3.15e-01 71.9% 32.4%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.56 44.0 3.71e-01 100.0% 63.6%
4twbA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 44.0 2.88e-01 93.8% 27.0%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 40.0 2.83e-01 78.1% 19.5%
1u9yA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 43.0 2.86e-01 93.8% 28.7%
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.55 43.0 2.68e-01 96.9% 14.3%
3lp5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 39.0 2.38e-01 81.2% 18.8%
5mp7A01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 44.0 2.81e-01 96.9% 24.7%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 2.84e-01 84.4% 27.0%
6qdws00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.54 37.0 2.97e-01 100.0% 56.9%
1r0vA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 44.0 3.43e-01 100.0% 59.7%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 39.0 2.97e-01 100.0% 58.2%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.52 36.0 3.03e-01 81.2% 50.0%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.52 39.0 2.40e-01 100.0% 91.8%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.52 41.0 2.75e-01 100.0% 38.6%
1ilvA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.51 37.0 2.37e-01 100.0% 68.6%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.51 34.0 2.96e-01 100.0% 36.8%
2y3aA01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 36.0 2.27e-01 100.0% 21.1%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 39.0 2.52e-01 100.0% 91.3%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4499424 812.1.1.1 a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.78 64.0 5.11e-01 100.0% 54.3%
4955690 327.10.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.73 59.0 4.80e-01 100.0% 45.7%
3962782 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.73 54.0 3.43e-01 100.0% 16.9%
None 0.72 50.0 2.86e-01 71.9% 7.4%
3519143 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.72 50.0 2.89e-01 71.9% 8.5%
3510281 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.71 54.0 3.45e-01 100.0% 16.1%
4595166 5076.2.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.71 51.0 3.07e-01 81.2% 12.0%
3392234 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.70 55.0 3.35e-01 90.6% 17.6%
4976267 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 46.0 2.75e-01 71.9% 8.6%
3246937 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.69 56.0 4.48e-01 100.0% 55.7%
3721917 101.36.1.0 alpha arrays › HTH › YetF C-terminal domain › YetF C-terminal domain 0.68 50.0 4.39e-01 100.0% 50.8%
4944882 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.68 52.0 4.79e-01 100.0% 92.0%
3225917 2498.1.1.23 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 0.67 54.0 2.93e-01 100.0% 4.7%
3853273 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.66 51.0 4.52e-01 100.0% 58.0%
3523834 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.64 55.0 3.11e-01 100.0% 29.0%
3217417 5001.1.1.121 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › TRAM_LAG1_CLN8 0.64 45.0 2.57e-01 71.9% 6.8%
3468880 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 46.0 2.73e-01 100.0% 9.7%
3414363 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.63 46.0 2.65e-01 84.4% 52.7%
4616697 7527.1.1.1 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.63 49.0 2.97e-01 100.0% 33.1%
5031154 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.62 53.0 4.44e-01 100.0% 56.7%
None 0.61 42.0 2.73e-01 78.1% 17.8%
5078830 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.61 43.0 2.56e-01 71.9% 8.7%
4399128 7581.1.1.30 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt, Thiolase_C 0.61 46.0 2.69e-01 100.0% 73.8%
3957239 3781.1.1.1 a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N 0.61 44.0 4.23e-01 100.0% 66.7%
3924318 6166.1.1.0 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 0.60 41.0 2.65e-01 75.0% 73.3%
3960213 304.156.1.5 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › PF31086 0.60 49.0 3.44e-01 100.0% 74.8%
3986225 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.60 47.0 2.95e-01 96.9% 15.1%
3391162 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 42.0 2.65e-01 100.0% 77.3%
3189419 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.59 43.0 2.61e-01 90.6% 11.4%
3464866 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.58 43.0 2.88e-01 93.8% 94.7%
3389084 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.58 48.0 2.76e-01 100.0% 48.2%
4967714 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.58 44.0 3.89e-01 100.0% 56.7%
5072161 377.12.1.0 few secondary structure elements › Glucocorticoid receptor-like › RPL34 › RPL34 0.57 41.0 3.22e-01 90.6% 28.9%
4070106 205.1.1.16 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.57 42.0 2.79e-01 100.0% 17.1%
5002351 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.57 43.0 2.45e-01 71.9% 6.1%
3492622 3338.1.1.0 a+b two layers › Fragilysin-3 prodomain-like › Fragilysin-3 prodomain › Fragilysin-3 prodomain 0.57 42.0 3.08e-01 100.0% 84.6%
3483425 3745.1.1.0 alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger 0.56 41.0 2.33e-01 87.5% 55.1%
5010647 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.56 42.0 2.56e-01 84.4% 12.0%
169012 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.56 40.0 2.72e-01 100.0% 79.4%
3197950 256.1.1.0 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.54 39.0 3.76e-01 96.9% 66.7%
3610562 2492.1.1.11 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.54 36.0 2.36e-01 90.6% 57.0%
4942905 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.53 41.0 3.91e-01 100.0% 75.6%
5050197 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.53 44.0 3.49e-01 100.0% 44.0%
5082895 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.53 42.0 2.76e-01 96.9% 26.7%
4651987 205.1.1.0 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.53 36.0 2.62e-01 87.5% 31.1%
3891434 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.52 37.0 2.68e-01 96.9% 26.4%
4492004 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.52 39.0 2.82e-01 100.0% 92.2%
3940272 2498.1.1.14 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.52 40.0 2.27e-01 84.4% 6.4%
3386398 601.50.1.1 alpha bundles › Four-helical up-and-down bundle › Flagellar cap protein FliD helical bundle domain › Flagellar cap protein FliD helical bundle domain › FliD_C 0.51 43.0 2.84e-01 100.0% 69.4%
3937688 10.32.1.33 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CIA30 0.51 38.0 2.71e-01 100.0% 22.4%
3627409 6166.1.1.1 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.51 36.0 2.31e-01 75.0% 12.0%
4087557 7581.1.1.1 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.51 38.0 2.29e-01 100.0% 73.6%
5041736 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.00e-01 90.6% 73.3%