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IMGVR_UViG_3300008003_000658-3300008003-Ga0100391_10050377

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300008003_000658-3300008003-Ga0100391_10050377 ↗
Kingdom:: archaea

Quality

76.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-130

PDB

Domain cluster: rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10544.16 best	T5orf172	40.2	5.80e-10	99.1%	96.9%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3jcmH04	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.60	35.0	4.12e-01	88.4%	83.1%
2dy1A03	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.60	34.0	4.04e-01	88.4%	82.9%
2e9hA01	3.30.30.170	Alpha Beta › 2-Layer Sandwich › Defensin A-like ›	0.60	40.0	3.99e-01	100.0%	67.3%
4jz8B00	3.40.1160.10	Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like	0.58	43.0	3.23e-01	79.5%	95.8%
2v2gA02	3.30.1020.10	Alpha Beta › 2-Layer Sandwich › Antioxidant, Horf6; Chain A, domain 2 › Antioxidant, Horf6; Chain A, domain2	0.56	29.0	3.44e-01	92.0%	74.3%
2cveA02	3.30.70.240	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	31.0	3.79e-01	89.3%	90.9%
1itpA00	3.30.70.80	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9	0.55	29.0	3.38e-01	85.7%	72.7%
2xmjA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	30.0	3.80e-01	87.5%	95.2%
4v1al00	3.30.780.10	Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain	0.54	38.0	3.57e-01	100.0%	60.2%
3e3xA01	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.53	34.0	3.43e-01	89.3%	63.7%
4lrjA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.53	30.0	3.54e-01	88.4%	83.6%
4hqeA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	32.0	3.34e-01	91.1%	67.6%
3gfhA01	3.30.70.1710	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain	0.50	38.0	3.92e-01	100.0%	82.7%

ECOD (22)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3613416	821.1.1.3 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172	0.81	64.0	6.31e-01	100.0%	77.5%
3732593	4340.1.1.1 ↗	a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb5	0.62	32.0	4.02e-01	92.0%	84.6%
4988554	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.62	31.0	3.90e-01	87.5%	81.5%
4499356	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.61	29.0	4.01e-01	97.3%	100.0%
4102573	101.1.2.28 ↗	alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B	0.59	37.0	4.23e-01	98.2%	87.5%
4012791	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.58	33.0	3.87e-01	88.4%	80.0%
3970823	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.56	36.0	3.94e-01	88.4%	80.0%
4267064	304.24.1.3 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III	0.56	36.0	3.92e-01	88.4%	80.0%
4946082	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.56	32.0	3.79e-01	88.4%	84.0%
2879783	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.54	31.0	3.76e-01	88.4%	85.3%
3529972	327.16.1.6 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › DTX3L_a-b	0.54	30.0	3.58e-01	90.2%	84.3%
3600755	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.53	37.0	3.74e-01	98.2%	71.8%
4378741	327.11.2.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I)	0.53	33.0	3.73e-01	90.2%	86.3%
3409935	377.1.1.18 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-AD	0.53	34.0	3.77e-01	94.6%	84.7%
4995922	304.24.1.3 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III	0.52	30.0	3.54e-01	88.4%	84.0%
5041564	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.52	36.0	4.05e-01	98.2%	94.1%
5056655	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	33.0	3.71e-01	100.0%	88.7%
3980730	2002.1.1.152 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_3	0.51	39.0	2.66e-01	83.0%	89.1%
4971032	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.51	30.0	3.41e-01	92.0%	76.5%
5077265	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	30.0	3.17e-01	91.1%	61.9%
4972219	242.1.1.0 ↗	a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases	0.51	30.0	3.54e-01	92.9%	86.7%
4933437	101.1.9.83 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM	0.50	39.0	3.97e-01	97.3%	83.3%

D2 high residues 171-367

PDB

Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04851.22 best	ResIII	34.0	3.70e-08	81.7%	79.3%

D3 high residues 384-512

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3k8pC01	1.20.58.1440	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	36.0	3.91e-01	90.7%	89.5%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3626211	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	34.0	3.93e-01	87.6%	85.3%
3415618	379.1.1.0 ↗	few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors	0.52	20.0	2.82e-01	72.9%	73.3%
4038162	2006.1.1.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like	0.51	40.0	3.57e-01	100.0%	58.4%