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IMGVR_UViG_3300008007_000688-3300008007-Ga0100386_1000086265

Arc-Vir

IMGVR_UViG_3300008007_000688-3300008007-Ga0100386_1000086265

Quality

87.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-67_145-183
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7rb4A01 3.90.175.10 Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 0.78 68.0 5.28e-01 92.9% 89.2%
1f0lA01 3.90.175.10 Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 0.78 71.0 5.65e-01 98.0% 90.9%
1wfxA02 3.20.170.30 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › 0.68 58.0 6.03e-01 92.9% 100.0%
2uv8A06 3.30.70.2490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 30.0 3.59e-01 73.7% 76.1%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 29.0 3.29e-01 70.7% 75.0%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3202097 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.84 72.0 5.54e-01 91.9% 71.4%
3602129 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.81 74.0 6.15e-01 98.0% 90.8%
3258058 237.1.1.1 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP 0.80 71.0 5.45e-01 93.9% 56.6%
5061730 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.67 54.0 5.65e-01 89.9% 95.6%
5060086 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.66 55.0 5.67e-01 92.9% 93.7%
1721535 237.1.1.21 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPRTs_Tse2 0.65 53.0 4.64e-01 88.9% 90.8%
3704305 4.1.1.344 beta barrels › SH3 › SH3 › SH3 › PF31193 0.65 33.0 3.79e-01 96.0% 67.1%
5077692 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.64 54.0 5.31e-01 91.9% 88.6%
D2 high residues 69-142
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u61D03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.70 53.0 4.94e-01 81.1% 73.6%
7wd3A04 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.68 46.0 4.61e-01 71.6% 71.8%
1or7B01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.68 46.0 4.25e-01 70.3% 63.8%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.67 48.0 3.87e-01 74.3% 84.4%
1tizA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.67 47.0 4.89e-01 73.0% 95.5%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.67 48.0 5.32e-01 81.1% 100.0%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.66 49.0 5.05e-01 90.5% 81.7%
2pusA05 1.10.1740.80 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.66 50.0 4.92e-01 82.4% 80.0%
3ciaA03 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.65 55.0 4.37e-01 94.6% 88.4%
5ubvA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.65 44.0 4.50e-01 70.3% 77.5%
1ng6A01 1.10.1510.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain 0.64 48.0 4.55e-01 81.1% 100.0%
3whkA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 43.0 4.41e-01 70.3% 75.0%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.63 47.0 4.93e-01 85.1% 88.1%
1ywmA02 1.20.1270.150 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein 0.63 46.0 4.61e-01 78.4% 84.2%
2p11A02 1.10.286.50 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.62 49.0 4.93e-01 94.6% 89.2%
3qxyA02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.62 52.0 4.04e-01 94.6% 92.8%
4cxfA01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.61 44.0 4.22e-01 77.0% 95.4%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.61 50.0 4.82e-01 91.9% 82.6%
1jfiB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.61 43.0 3.54e-01 74.3% 40.0%
2ogiB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.60 50.0 3.80e-01 95.9% 52.3%
2k77A00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.59 45.0 3.69e-01 83.8% 82.1%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 45.0 4.35e-01 83.8% 89.2%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.58 41.0 3.89e-01 74.3% 63.6%
2sasA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 50.0 3.79e-01 98.6% 68.6%
1nf1A01 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.57 48.0 4.65e-01 100.0% 84.3%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.25e-01 78.4% 68.3%
4anjA06 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 39.0 3.52e-01 74.3% 70.8%
4b0nA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.56 40.0 2.84e-01 75.7% 24.7%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.55 45.0 4.43e-01 93.2% 89.9%
1v1gA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 43.0 3.30e-01 87.8% 98.4%
4yt2A02 1.20.120.1300 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hmd, C-terminal helical subdomain 0.54 44.0 3.99e-01 91.9% 78.3%
4c0kA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 43.0 3.91e-01 87.8% 85.1%
3a8rA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 38.0 3.37e-01 77.0% 48.7%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.54 44.0 4.43e-01 94.6% 92.1%
3tduA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 39.0 3.65e-01 78.4% 62.2%
2p18A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 46.0 3.16e-01 100.0% 45.9%
5v89A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 37.0 3.58e-01 81.1% 81.8%
4b63A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 2.69e-01 100.0% 81.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4027147 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.74 53.0 4.35e-01 75.7% 75.4%
3087357 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.72 54.0 5.16e-01 81.1% 83.0%
3570012 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.72 56.0 5.46e-01 83.8% 86.3%
4940134 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.71 58.0 4.27e-01 90.5% 33.8%
3907843 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.69 48.0 4.52e-01 73.0% 71.1%
5001051 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.68 51.0 5.59e-01 82.4% 100.0%
3291695 4019.1.1.6 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.68 52.0 4.25e-01 98.6% 44.3%
5023341 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.67 52.0 5.34e-01 83.8% 87.1%
4941579 148.1.3.19 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.67 46.0 4.20e-01 71.6% 60.0%
3962480 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.67 46.0 4.39e-01 70.3% 70.6%
5077807 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.67 52.0 5.31e-01 82.4% 87.1%
3929177 601.21.1.2 alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase › Evr1_Alr,FAD_SOX 0.66 47.0 3.26e-01 75.7% 23.9%
4939372 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.66 52.0 5.40e-01 85.1% 91.4%
5053768 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 54.0 3.47e-01 93.2% 24.4%
4814 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.65 45.0 3.96e-01 73.0% 55.8%
4929738 6049.1.1.0 alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.65 56.0 5.62e-01 95.9% 97.3%
3900651 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.65 46.0 4.29e-01 75.7% 84.2%
4992927 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.64 49.0 5.03e-01 82.4% 100.0%
4947265 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.64 51.0 5.27e-01 87.8% 98.6%
4369469 148.1.3.203 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.64 44.0 3.66e-01 73.0% 65.2%
3407438 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 48.0 4.35e-01 82.4% 59.0%
4995195 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.63 44.0 3.04e-01 91.9% 22.6%
4951777 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.63 55.0 3.60e-01 100.0% 38.0%
5003875 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.63 48.0 5.11e-01 86.5% 93.8%
5052889 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.63 53.0 3.42e-01 94.6% 21.7%
3614 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.63 47.0 4.88e-01 82.4% 100.0%
4667710 630.1.1.1 a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind 0.63 51.0 4.02e-01 93.2% 94.1%
3684477 108.1.1.30 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 0.63 45.0 3.68e-01 78.4% 80.7%
3957454 148.1.3.19 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.62 45.0 4.36e-01 77.0% 74.1%
3998827 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.62 46.0 4.46e-01 79.7% 77.6%
4640142 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 44.0 4.75e-01 93.2% 91.7%
3179612 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 47.0 4.84e-01 93.2% 88.6%
4024028 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.62 45.0 3.63e-01 78.4% 71.3%
5022206 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.61 44.0 2.92e-01 75.7% 23.2%
3671688 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 4.68e-01 81.1% 88.6%
3686668 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.60 50.0 4.00e-01 95.9% 90.0%
4028424 1128.1.1.11 alpha bundles › LYR protein › LYR protein › LYR protein › Microp_apicomplexa_7 0.60 45.0 4.36e-01 81.1% 82.4%
3703000 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.59 45.0 4.67e-01 81.1% 94.3%
5071262 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 48.0 3.13e-01 95.9% 25.4%
4861051 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.58 44.0 4.31e-01 81.1% 82.7%
5061172 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.58 47.0 3.78e-01 93.2% 96.9%
3787531 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.58 44.0 4.35e-01 82.4% 90.0%
3932008 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.58 44.0 4.42e-01 82.4% 90.7%
3720895 2003.1.5.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 0.57 41.0 2.80e-01 75.7% 56.1%
3596092 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 46.0 4.35e-01 90.5% 90.0%
4451187 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.57 44.0 4.64e-01 82.4% 96.9%
3789538 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 41.0 3.98e-01 86.5% 81.2%
5054353 2006.1.4.50 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 0.52 41.0 3.12e-01 94.6% 90.7%
5024799 148.1.3.19 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.51 35.0 3.46e-01 73.0% 73.8%
4995419 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.50 41.0 3.97e-01 90.5% 80.0%