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IMGVR_UViG_3300008007_000865-3300008007-Ga0100386_1000016247
Arc-VirIMGVR_UViG_3300008007_000865-3300008007-Ga0100386_1000016247
Identity
- Kingdom:
- archaea
Quality
91.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-204
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01694.29 best | Rhomboid | 53.3 | 4.80e-14 | 71.6% | 95.1% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nr9A00 | 1.20.1540.10 | Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like | 0.83 | 74.0 | 7.60e-01 | 93.6% | 98.4% |
| 2xtuA00 | 1.20.1540.10 | Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like | 0.82 | 70.0 | 7.44e-01 | 91.2% | 100.0% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.57 | 27.0 | 3.32e-01 | 71.1% | 70.2% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.55 | 25.0 | 3.61e-01 | 85.8% | 96.6% |
| 7watB02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 38.0 | 3.30e-01 | 72.1% | 56.0% |
| 7yu4A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 43.0 | 4.03e-01 | 84.8% | 70.8% |
| 2gs4A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 35.0 | 3.93e-01 | 77.9% | 87.3% |
| 3p5pA03 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 37.0 | 3.25e-01 | 72.5% | 57.4% |
| 7c4sB01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 41.0 | 3.72e-01 | 82.8% | 71.4% |
| 7ed6A01 | 1.25.40.340 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain | 0.51 | 31.0 | 3.17e-01 | 81.9% | 59.8% |
| 1rtwB00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.51 | 40.0 | 4.03e-01 | 94.1% | 81.2% |
| 3lomA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 35.0 | 3.12e-01 | 96.6% | 48.6% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.50 | 28.0 | 3.70e-01 | 79.9% | 100.0% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3954015 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.86 | 78.0 | 8.06e-01 | 94.1% | 99.5% |
| 3934092 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.85 | 73.0 | 7.76e-01 | 94.1% | 100.0% |
| 3067085 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.84 | 71.0 | 7.57e-01 | 88.2% | 100.0% |
| 3988861 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.84 | 74.0 | 7.33e-01 | 92.2% | 91.2% |
| 3590444 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.84 | 78.0 | 7.51e-01 | 98.5% | 88.0% |
| 5052842 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.83 | 74.0 | 7.74e-01 | 94.1% | 99.5% |
| 4247 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.83 | 73.0 | 7.63e-01 | 93.1% | 99.5% |
| 4057139 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.83 | 71.0 | 7.51e-01 | 92.2% | 98.9% |
| 4615926 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 70.0 | 7.48e-01 | 89.2% | 100.0% |
| 3969883 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 73.0 | 7.37e-01 | 93.1% | 100.0% |
| 4079748 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 73.0 | 7.45e-01 | 91.7% | 95.9% |
| 3284826 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 73.0 | 7.09e-01 | 93.6% | 85.9% |
| 3676512 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 75.0 | 7.30e-01 | 96.1% | 91.4% |
| 3302941 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 72.0 | 7.28e-01 | 92.6% | 100.0% |
| 3438721 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 72.0 | 7.28e-01 | 93.1% | 99.5% |
| 4991388 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 68.0 | 7.27e-01 | 92.6% | 100.0% |
| 3643677 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 70.0 | 6.52e-01 | 90.2% | 90.6% |
| 4942502 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 71.0 | 7.13e-01 | 91.2% | 92.2% |
| 5011657 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 66.0 | 7.14e-01 | 88.7% | 100.0% |
| 5053424 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 70.0 | 7.35e-01 | 93.6% | 100.0% |
| 4946808 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 70.0 | 7.21e-01 | 90.7% | 100.0% |
| 5014154 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 71.0 | 7.38e-01 | 93.6% | 99.5% |
| 4025858 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 71.0 | 7.03e-01 | 92.2% | 93.8% |
| 5082662 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 70.0 | 6.92e-01 | 90.7% | 92.4% |
| 3241943 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.79 | 70.0 | 6.86e-01 | 92.6% | 89.5% |
| 4216967 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.79 | 69.0 | 6.70e-01 | 91.2% | 85.8% |
| 4421392 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.79 | 69.0 | 6.70e-01 | 90.2% | 95.5% |
| 3248617 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.79 | 71.0 | 6.80e-01 | 93.6% | 90.4% |
| 5042736 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.78 | 68.0 | 7.19e-01 | 90.2% | 100.0% |
| 5066829 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.78 | 68.0 | 6.77e-01 | 90.7% | 100.0% |
| 4025642 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.78 | 68.0 | 7.06e-01 | 90.7% | 100.0% |
| 4021584 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.78 | 67.0 | 6.58e-01 | 90.2% | 90.5% |
| 3631632 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.77 | 72.0 | 6.56e-01 | 96.6% | 85.1% |
| 5000985 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.77 | 68.0 | 6.94e-01 | 91.2% | 99.0% |
| 4665476 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.77 | 67.0 | 6.60e-01 | 90.2% | 87.4% |
| 3732923 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.77 | 58.0 | 6.25e-01 | 77.0% | 100.0% |
| 3250458 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.76 | 69.0 | 6.89e-01 | 96.1% | 100.0% |
| 3991492 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.76 | 67.0 | 6.52e-01 | 92.2% | 90.6% |
| 3690311 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.75 | 58.0 | 5.49e-01 | 78.4% | 89.3% |
| 3204146 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.75 | 67.0 | 6.56e-01 | 92.2% | 89.8% |
| 3830489 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.75 | 66.0 | 6.75e-01 | 91.7% | 100.0% |
| 3849112 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.74 | 67.0 | 6.32e-01 | 95.1% | 84.8% |
| 4962264 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.72 | 52.0 | 5.88e-01 | 74.0% | 99.4% |
| 4233690 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.57 | 27.0 | 3.10e-01 | 71.1% | 58.7% |
| 3668856 | 604.5.1.7 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT | 0.53 | 31.0 | 3.97e-01 | 86.8% | 100.0% |
| 3669050 | 310.2.1.48 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › TMEM62_C | 0.53 | 42.0 | 4.01e-01 | 83.8% | 100.0% |
| 3439762 | 5059.1.1.16 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › SLC35F | 0.52 | 44.0 | 4.02e-01 | 95.6% | 68.7% |
| 5054129 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.51 | 43.0 | 4.41e-01 | 92.6% | 90.1% |