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IMGVR_UViG_3300008008_000033-3300008008-Ga0100399_100210613

Arc-Vir

IMGVR_UViG_3300008008_000033-3300008008-Ga0100399_100210613

Identity

Kingdom:
archaea

Quality

90.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-65
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eg3A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.69 34.0 4.19e-01 87.3% 76.3%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.65 45.0 4.86e-01 96.8% 90.2%
3kifD00 2.20.25.650 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Tachylectin-2-like 0.64 37.0 3.29e-01 95.2% 38.5%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.63 42.0 4.76e-01 96.8% 97.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.62 38.0 4.07e-01 90.5% 73.1%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 39.0 4.28e-01 90.5% 85.1%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 38.0 4.09e-01 90.5% 76.9%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 43.0 4.03e-01 96.8% 60.8%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.60 51.0 4.07e-01 100.0% 66.9%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 39.0 4.08e-01 90.5% 72.9%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 39.0 3.92e-01 90.5% 66.7%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 34.0 3.47e-01 73.0% 55.6%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.59 39.0 3.64e-01 92.1% 55.8%
2kv1A01 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.59 40.0 3.72e-01 73.0% 88.4%
2i2lA01 2.10.70.50 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.59 42.0 4.56e-01 92.1% 94.2%
1a2pA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.59 40.0 3.42e-01 92.1% 42.6%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 49.0 4.23e-01 100.0% 74.1%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.57 38.0 3.30e-01 92.1% 41.7%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.57 37.0 3.90e-01 90.5% 77.8%
3gvpA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 43.0 3.23e-01 82.5% 78.6%
5cq2A02 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 35.0 4.10e-01 92.1% 93.0%
6k5gA01 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.56 38.0 2.53e-01 98.4% 17.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.06e-01 95.2% 72.6%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.55 34.0 2.98e-01 93.7% 40.0%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 38.0 3.82e-01 92.1% 71.9%
3ijcA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 40.0 2.60e-01 82.5% 74.2%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.54 44.0 3.62e-01 92.1% 83.5%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.53 40.0 2.88e-01 81.0% 28.4%
5xu6C01 3.30.200.110 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe 0.53 34.0 2.93e-01 87.3% 37.0%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 37.0 3.89e-01 92.1% 84.2%
1x1iA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 44.0 2.96e-01 96.8% 40.7%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 35.0 3.19e-01 100.0% 48.9%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 37.0 3.76e-01 92.1% 79.0%
1f8wA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 3.30e-01 100.0% 47.9%
4govA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 43.0 3.48e-01 98.4% 89.3%
1a0rB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 39.0 2.48e-01 85.7% 79.4%
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 41.0 3.33e-01 98.4% 95.0%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.50 33.0 2.82e-01 88.9% 36.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927852 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 42.0 3.66e-01 92.1% 40.0%
4998697 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 44.0 4.49e-01 95.2% 70.0%
4958343 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.66 41.0 3.65e-01 95.2% 44.4%
1558818 2.1.1.120 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis32-like_C 0.66 36.0 4.26e-01 71.4% 86.5%
3707784 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.64 35.0 4.31e-01 95.2% 94.3%
3263562 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.64 35.0 3.71e-01 92.1% 60.0%
3253491 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 43.0 4.34e-01 95.2% 69.2%
2516780 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.63 37.0 3.54e-01 95.2% 49.3%
3507975 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.61 37.0 2.36e-01 95.2% 11.9%
3576110 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.60 34.0 3.04e-01 93.7% 35.8%
3687725 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.60 31.0 3.90e-01 88.9% 100.0%
3994420 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.60 33.0 4.06e-01 90.5% 88.6%
3942961 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 4.84e-01 98.4% 82.5%
3243842 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 44.0 3.71e-01 81.0% 51.8%
3473633 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.59 33.0 4.07e-01 93.7% 97.1%
3324317 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.57 39.0 2.52e-01 93.7% 13.7%
4494810 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.57 42.0 3.86e-01 96.8% 61.3%
3584345 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.57 42.0 3.30e-01 79.4% 40.0%
4554167 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.55 34.0 3.30e-01 95.2% 52.9%
5050793 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 41.0 2.58e-01 82.5% 26.1%
42398 12.3.1.5 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Lyase_8 0.55 41.0 2.80e-01 84.1% 82.1%
4562142 136.1.1.1 ↗ alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › peroxidase 0.54 40.0 2.58e-01 100.0% 14.9%
4982613 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 33.0 3.32e-01 98.4% 60.0%
3518032 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.52 44.0 2.83e-01 100.0% 43.8%
3430287 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.51 41.0 2.69e-01 96.8% 18.7%
3741545 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.51 43.0 2.62e-01 93.7% 22.9%
3431397 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 44.0 2.76e-01 98.4% 96.6%
3455400 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.51 42.0 2.75e-01 96.8% 24.4%
3574751 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.89e-01 90.5% 100.0%