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IMGVR_UViG_3300008095_000719-3300008095-Ga0100392_10240765

Arc-Vir

IMGVR_UViG_3300008095_000719-3300008095-Ga0100392_10240765

Identity

Kingdom:
archaea

Quality

76.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-34
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.69 52.0 3.44e-01 97.1% 22.7%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.68 54.0 4.39e-01 97.1% 46.7%
1ksiA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.68 55.0 3.14e-01 100.0% 42.8%
1f8vC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 52.0 3.01e-01 88.2% 65.3%
1gesA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.67 54.0 3.92e-01 100.0% 31.0%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.67 51.0 4.13e-01 94.1% 58.4%
1ilvA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.67 49.0 3.07e-01 100.0% 13.1%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.66 50.0 4.10e-01 97.1% 44.9%
3v10A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 49.0 3.24e-01 88.2% 18.3%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 3.76e-01 82.4% 34.6%
2hn1A01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.64 46.0 3.14e-01 82.4% 19.7%
1dw9A02 3.30.1160.10 Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain 0.63 47.0 3.87e-01 88.2% 42.6%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.63 47.0 2.85e-01 94.1% 10.5%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.62 45.0 3.92e-01 91.2% 50.0%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.62 48.0 3.29e-01 91.2% 92.2%
7jiuA03 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.62 46.0 3.16e-01 88.2% 22.1%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.62 43.0 2.47e-01 88.2% 11.9%
2f7sA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 49.0 3.23e-01 100.0% 20.1%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 43.0 3.14e-01 76.5% 27.0%
3iabB01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.61 43.0 3.15e-01 73.5% 62.6%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.61 46.0 3.76e-01 100.0% 43.1%
4zg5A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.60 45.0 2.84e-01 100.0% 15.0%
1pfoA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.60 45.0 4.15e-01 91.2% 66.0%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.59 45.0 4.02e-01 91.2% 67.9%
3zjbA00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.59 43.0 2.85e-01 88.2% 20.9%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.58 40.0 3.10e-01 94.1% 27.3%
3wa7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 44.0 2.49e-01 94.1% 7.3%
4jphB00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.56 42.0 3.12e-01 91.2% 42.3%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.55 44.0 3.36e-01 94.1% 37.1%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.55 40.0 2.72e-01 85.3% 18.0%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.55 48.0 3.00e-01 100.0% 79.6%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 40.0 2.75e-01 88.2% 39.5%
3ljsA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 41.0 2.50e-01 94.1% 40.6%
1yk9A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 41.0 2.70e-01 97.1% 37.5%
7uclA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 38.0 2.94e-01 85.3% 31.4%
3gw6A03 3.30.2460.10 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain 0.53 39.0 3.55e-01 82.4% 77.2%
1ciiA02 3.30.305.10 Alpha Beta › 2-Layer Sandwich › Colicin Ia; domain 2 › Colicin Ia; domain 2 0.52 41.0 3.15e-01 100.0% 88.1%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 2.65e-01 85.3% 28.0%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4591455 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.74 63.0 3.84e-01 100.0% 19.1%
4015832 230.1.1.0 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like 0.72 54.0 3.92e-01 88.2% 28.6%
4954110 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.71 60.0 3.67e-01 100.0% 23.1%
3644913 708.1.1.2 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY 0.70 51.0 3.91e-01 82.4% 32.9%
4635225 7527.1.1.1 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.69 52.0 3.19e-01 100.0% 12.3%
4004108 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.68 54.0 3.31e-01 100.0% 16.4%
3997559 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.68 54.0 3.31e-01 97.1% 55.8%
4891081 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.67 53.0 3.53e-01 97.1% 19.9%
3393465 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.67 53.0 3.80e-01 94.1% 29.5%
3958814 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 50.0 4.13e-01 97.1% 41.2%
4972484 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.66 53.0 3.90e-01 97.1% 31.4%
4518214 223.1.1.17 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › ScfRs 0.66 50.0 3.88e-01 100.0% 34.0%
3539536 101.17.1.3 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_1 0.66 55.0 4.69e-01 100.0% 91.7%
1723386 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 48.0 4.57e-01 97.1% 65.9%
1943 11.13.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.65 48.0 2.90e-01 91.2% 10.2%
4160831 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.65 48.0 2.64e-01 100.0% 4.6%
3684690 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.65 50.0 3.94e-01 100.0% 51.1%
3486149 221.15.1.1 ↗ a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase › DUF2340 0.64 45.0 3.90e-01 76.5% 43.3%
3639274 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.64 51.0 2.86e-01 100.0% 6.7%
None — 0.63 47.0 2.86e-01 94.1% 10.6%
3394803 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.63 51.0 3.39e-01 100.0% 46.9%
3280088 223.1.1.17 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › ScfRs 0.63 46.0 3.64e-01 100.0% 34.0%
3436318 230.5.1.0 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.62 46.0 3.47e-01 85.3% 33.3%
3485197 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.61 49.0 3.23e-01 97.1% 61.9%
3211918 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.61 48.0 3.24e-01 100.0% 24.4%
3583086 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.61 50.0 3.54e-01 88.2% 27.8%
2595209 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.61 47.0 4.11e-01 88.2% 51.7%
5048593 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.61 45.0 2.97e-01 88.2% 18.9%
3675745 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.60 49.0 3.99e-01 91.2% 42.5%
3707374 109.4.1.1341 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG3_N, COG3_C 0.60 48.0 2.69e-01 97.1% 5.9%
3200202 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.60 43.0 2.74e-01 97.1% 14.0%
4973231 304.48.1.20 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1 0.59 46.0 2.83e-01 97.1% 44.2%
3257755 3529.1.1.6 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Band_7 0.59 43.0 3.72e-01 91.2% 80.0%
5023739 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.59 47.0 3.55e-01 97.1% 31.4%
4839809 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 4.21e-01 85.3% 78.4%
3622878 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.58 45.0 3.71e-01 97.1% 44.3%
4065107 2004.1.1.552 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C 0.58 46.0 2.55e-01 91.2% 72.1%
2323986 601.7.1.40 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C 0.58 43.0 2.58e-01 91.2% 11.2%
1031169 3709.1.1.1 ↗ a+b two layers › ESX-1 secretion system protein eccB1 linker domains › ESX-1 secretion system protein eccB1 linker domains › ESX-1 secretion system protein eccB1 linker domains › T7SS_ESX1_EccB 0.57 42.0 4.08e-01 85.3% 72.1%
3273636 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.57 40.0 3.47e-01 82.4% 43.1%
3790940 306.3.1.2 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › Img2 0.56 40.0 3.06e-01 97.1% 52.1%
5043427 3010.1.1.2 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.56 48.0 3.63e-01 100.0% 63.6%
4262649 812.2.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase 0.56 40.0 3.25e-01 91.2% 36.3%
4183697 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 41.0 2.75e-01 88.2% 17.4%
4160692 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.53 41.0 2.63e-01 100.0% 43.1%
3185221 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 38.0 2.27e-01 100.0% 49.4%
3815772 109.4.1.1580 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C 0.53 42.0 2.32e-01 100.0% 5.2%
3488036 2004.1.1.176 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp 0.52 42.0 2.65e-01 100.0% 16.7%
3947849 3609.1.1.4 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › ArdcN 0.50 35.0 2.98e-01 100.0% 70.8%
3784942 2007.1.4.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › DAGK_cat 0.50 37.0 2.43e-01 88.2% 18.5%