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IMGVR_UViG_3300008117_001899-3300008117-Ga0114351_10172021
Arc-VirIMGVR_UViG_3300008117_001899-3300008117-Ga0114351_10172021
Identity
- Kingdom:
- archaea
Quality
81.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-118_239-249
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.70 | 41.0 | 5.06e-01 | 99.1% | 93.9% |
| 1qu3A04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.68 | 47.0 | 4.24e-01 | 82.4% | 51.3% |
| 1k8kG00 | 1.25.40.190 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 | 0.67 | 33.0 | 2.99e-01 | 89.8% | 36.0% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.65 | 57.0 | 4.86e-01 | 94.4% | 92.5% |
| 1wa8A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.65 | 45.0 | 4.69e-01 | 71.3% | 76.8% |
| 2qupA00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.61 | 55.0 | 5.37e-01 | 100.0% | 100.0% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.60 | 49.0 | 5.26e-01 | 92.6% | 98.9% |
| 4bujE03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.59 | 50.0 | 3.96e-01 | 91.7% | 71.7% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.58 | 49.0 | 4.96e-01 | 95.4% | 89.6% |
| 3ay5A01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.58 | 51.0 | 4.74e-01 | 99.1% | 75.9% |
| 1eupA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 44.0 | 2.96e-01 | 79.6% | 58.1% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 49.0 | 4.99e-01 | 92.6% | 92.4% |
| 4wnfA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 46.0 | 3.45e-01 | 84.3% | 44.7% |
| 4n1yB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.57 | 43.0 | 3.45e-01 | 80.6% | 97.8% |
| 2bl7A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.56 | 32.0 | 3.68e-01 | 93.5% | 75.9% |
| 1g8xA06 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 49.0 | 3.46e-01 | 94.4% | 32.6% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.56 | 47.0 | 4.83e-01 | 91.7% | 95.1% |
| 5l92A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 42.0 | 2.86e-01 | 79.6% | 62.4% |
| 3p1uA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 46.0 | 2.99e-01 | 91.7% | 91.3% |
| 4g80T00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.55 | 51.0 | 4.63e-01 | 99.1% | 84.2% |
| 2fupA00 | 1.20.58.300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like | 0.54 | 50.0 | 4.72e-01 | 100.0% | 98.4% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.54 | 48.0 | 4.48e-01 | 97.2% | 83.5% |
| 3ccyA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 44.0 | 4.02e-01 | 90.7% | 72.1% |
| 1pn9B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 43.0 | 4.11e-01 | 87.0% | 93.1% |
| 3i0pA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.53 | 28.0 | 2.87e-01 | 79.6% | 48.1% |
| 5fhiA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 43.0 | 3.98e-01 | 88.0% | 92.8% |
| 1r5aA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 43.0 | 3.98e-01 | 88.9% | 89.7% |
| 1g4uS01 | 1.20.120.260 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain | 0.51 | 44.0 | 4.23e-01 | 95.4% | 92.1% |
| 3cbuA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 45.0 | 4.18e-01 | 98.1% | 76.9% |
| 3lxzB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.50 | 45.0 | 4.19e-01 | 98.1% | 78.3% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995682 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.74 | 37.0 | 4.04e-01 | 93.5% | 57.8% |
| 4144324 | 3811.1.1.1 ↗ | alpha bundles › Decorin-binding protein A › Decorin-binding protein A › Decorin-binding protein A › Decorin_bind | 0.66 | 52.0 | 4.47e-01 | 84.3% | 84.7% |
| 4247950 | 4994.1.1.1 ↗ | alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507 | 0.66 | 51.0 | 5.39e-01 | 93.5% | 91.6% |
| 3913487 | 604.1.1.124 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_6 | 0.66 | 40.0 | 4.03e-01 | 70.4% | 59.1% |
| 3789467 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.65 | 45.0 | 4.77e-01 | 71.3% | 87.4% |
| 3883588 | 604.1.1.125 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SYNRG_C | 0.64 | 53.0 | 4.43e-01 | 92.6% | 52.8% |
| 3487828 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.64 | 59.0 | 4.20e-01 | 100.0% | 55.3% |
| None | — | 0.63 | 57.0 | 4.13e-01 | 100.0% | 55.7% | |
| 4526844 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.62 | 58.0 | 4.88e-01 | 100.0% | 80.0% |
| 4028451 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.60 | 51.0 | 4.89e-01 | 90.7% | 96.8% |
| 3830963 | 603.1.1.100 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 | 0.59 | 53.0 | 5.15e-01 | 94.4% | 86.7% |
| None | — | 0.59 | 52.0 | 3.84e-01 | 99.1% | 54.9% | |
| 3708859 | 633.24.1.0 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain | 0.59 | 43.0 | 4.36e-01 | 94.4% | 77.1% |
| 4349635 | 141.1.1.0 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases | 0.58 | 52.0 | 3.86e-01 | 100.0% | 53.8% |
| 3616195 | 603.1.1.148 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Keratin_assoc | 0.58 | 50.0 | 5.17e-01 | 93.5% | 99.0% |
| 4402843 | 604.1.1.20 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA | 0.58 | 52.0 | 5.08e-01 | 94.4% | 93.9% |
| 3668440 | 141.1.1.0 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases | 0.58 | 51.0 | 3.83e-01 | 100.0% | 52.9% |
| 4297829 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.58 | 51.0 | 4.13e-01 | 99.1% | 88.1% |
| 3581264 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.57 | 48.0 | 4.65e-01 | 95.4% | 80.8% |
| 3666680 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.56 | 48.0 | 3.72e-01 | 90.7% | 57.4% |
| 5015340 | 3281.1.2.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit 8 (Nqo8)-related › NADHdh | 0.56 | 48.0 | 3.44e-01 | 95.4% | 36.1% |
| 3485285 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.55 | 50.0 | 3.63e-01 | 100.0% | 93.0% |
| 4105334 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.55 | 38.0 | 2.99e-01 | 70.4% | 77.3% |
| 3649222 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.55 | 46.0 | 3.24e-01 | 91.7% | 96.1% |
| 4960861 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.55 | 38.0 | 3.03e-01 | 70.4% | 80.5% |
| 3637359 | 604.10.1.7 ↗ | alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac › DUF202 | 0.55 | 46.0 | 4.78e-01 | 96.3% | 97.0% |
| 3887920 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 46.0 | 4.06e-01 | 92.6% | 74.8% |
| 3221299 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.54 | 46.0 | 4.27e-01 | 92.6% | 88.1% |
| 3628755 | 109.4.1.1493 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle, ZW10_C, ZW10_C2 | 0.53 | 46.0 | 2.81e-01 | 97.2% | 20.5% |
| 4968762 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.53 | 44.0 | 4.39e-01 | 95.4% | 86.1% |
| 4059286 | 109.1.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C | 0.52 | 44.0 | 3.94e-01 | 92.6% | 83.9% |
| 3406169 | 109.4.1.209 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Katanin_con80 | 0.52 | 42.0 | 3.60e-01 | 84.3% | 56.1% |
| 3471416 | 109.4.1.431 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ERK-JNK_inhib | 0.52 | 40.0 | 3.70e-01 | 82.4% | 77.2% |
| 3728304 | 604.12.1.24 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF6604 | 0.51 | 41.0 | 4.25e-01 | 86.1% | 92.0% |
| 3900921 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.51 | 44.0 | 4.32e-01 | 95.4% | 85.8% |
| 1196766 | 109.1.1.6 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 | 0.51 | 45.0 | 4.14e-01 | 98.1% | 75.2% |
| 4093477 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.50 | 42.0 | 3.30e-01 | 90.7% | 58.8% |
| 3970997 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.50 | 42.0 | 3.26e-01 | 90.7% | 59.7% |
D2
high
residues 134-235
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cpeA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 34.0 | 3.67e-01 | 100.0% | 72.9% |
| 5xzqF00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 36.0 | 3.63e-01 | 70.6% | 100.0% |
| 1mwqA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.52 | 34.0 | 3.49e-01 | 100.0% | 67.0% |
| 4xzjA01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.51 | 37.0 | 3.01e-01 | 78.4% | 64.5% |