Back to structures

IMGVR_UViG_3300008266_006874-3300008266-Ga0114363_100396514

Arc-Vir

IMGVR_UViG_3300008266_006874-3300008266-Ga0114363_100396514

Quality

68.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-103
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.68 51.0 5.01e-01 84.0% 73.9%
1ldjA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.68 56.0 5.03e-01 91.4% 70.4%
2looA02 1.10.10.1740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like 0.66 52.0 5.40e-01 87.7% 100.0%
3p01A01 6.10.140.590 Special › Helix non-globular › Helix Hairpins › 0.63 51.0 5.12e-01 91.4% 86.7%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 40.0 4.12e-01 71.6% 68.8%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 51.0 4.20e-01 91.4% 100.0%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 53.0 4.39e-01 95.1% 99.3%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.62 45.0 4.60e-01 84.0% 80.8%
2o36A01 1.20.1050.40 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Endopeptidase. Chain P; domain 1 0.62 51.0 4.40e-01 91.4% 72.7%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.61 51.0 4.69e-01 92.6% 74.5%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.61 39.0 4.26e-01 74.1% 80.0%
1bbhA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.61 45.0 3.81e-01 77.8% 69.5%
1e3pA02 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.60 50.0 4.97e-01 95.1% 100.0%
2bk9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 49.0 4.06e-01 93.8% 100.0%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 49.0 4.50e-01 92.6% 91.7%
3di2A00 1.20.1250.50 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 51.0 4.55e-01 96.3% 80.0%
3dd7C00 1.20.120.1870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain 0.58 46.0 4.10e-01 87.7% 66.4%
1jm6B02 1.20.140.20 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Alpha-ketoacid/pyruvate dehydrogenase kinase, N-terminal domain 0.58 51.0 4.18e-01 100.0% 65.0%
7dfeA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.58 44.0 3.91e-01 84.0% 57.5%
7smtA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.58 48.0 3.78e-01 91.4% 49.4%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.58 46.0 4.54e-01 86.4% 85.4%
3b0pA02 1.20.120.1460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 38.0 3.98e-01 77.8% 73.3%
2vk9A04 1.10.274.80 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.58 44.0 4.06e-01 93.8% 63.5%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 43.0 3.64e-01 80.2% 49.3%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 46.0 3.94e-01 90.1% 100.0%
3fnrA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.58 50.0 4.17e-01 97.5% 94.5%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.57 43.0 4.29e-01 85.2% 77.6%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.57 49.0 4.19e-01 100.0% 64.7%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 46.0 3.65e-01 90.1% 48.9%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.57 39.0 3.89e-01 71.6% 68.2%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.57 40.0 4.19e-01 75.3% 83.8%
1vw4T01 6.10.330.20 Special › Helix non-globular › Monooxygenase › 0.57 48.0 4.33e-01 92.6% 71.4%
3iu0A00 3.90.1360.10 Alpha Beta › Alpha-Beta Complex › Microbial transglutaminase. Chain: a › Protein-glutamine gamma-glutamyltransferase 0.56 48.0 3.20e-01 96.3% 31.1%
1bf5A01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.56 46.0 3.67e-01 91.4% 67.3%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 38.0 3.90e-01 84.0% 74.4%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.55 42.0 3.88e-01 95.1% 63.1%
2f33A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 35.0 3.66e-01 71.6% 73.2%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.54 38.0 3.45e-01 74.1% 52.6%
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 33.0 3.61e-01 81.5% 76.6%
4uurA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 46.0 4.02e-01 96.3% 100.0%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.54 47.0 4.14e-01 97.5% 77.3%
1zzpA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.53 40.0 3.64e-01 81.5% 83.5%
3rkoG00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 37.0 3.57e-01 77.8% 70.0%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 41.0 4.27e-01 88.9% 100.0%
2qe7G01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.52 35.0 3.37e-01 71.6% 89.7%
1quuA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 43.0 3.77e-01 92.6% 81.7%
2ncoA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 42.0 3.92e-01 88.9% 72.5%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.51 42.0 4.06e-01 87.7% 100.0%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5001603 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.67 55.0 5.36e-01 96.3% 81.1%
5044192 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.67 54.0 3.41e-01 90.1% 28.4%
3962321 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 4.86e-01 85.2% 81.0%
4346135 3921.1.1.0 alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D 0.65 54.0 4.26e-01 93.8% 51.1%
3574981 604.12.1.91 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › RSLD_CPSF6 0.64 50.0 5.31e-01 90.1% 100.0%
4945181 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.63 51.0 4.44e-01 90.1% 86.2%
3914806 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.63 54.0 4.40e-01 96.3% 98.7%
3278832 106.1.1.11 alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.63 52.0 4.42e-01 91.4% 63.7%
3236092 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.62 48.0 4.88e-01 88.9% 86.3%
3199872 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.62 52.0 4.85e-01 91.4% 78.0%
3262 198.1.1.26 alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF31278 0.62 45.0 4.60e-01 84.0% 80.8%
4060266 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.61 52.0 4.14e-01 96.3% 92.4%
3429545 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.61 48.0 4.21e-01 86.4% 56.8%
3309008 375.1.1.246 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rad50_zn_hook 0.61 42.0 3.89e-01 71.6% 60.0%
4336668 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.61 46.0 4.78e-01 85.2% 90.7%
4966516 604.12.1.142 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › NfeD_membrane 0.61 48.0 4.13e-01 85.2% 57.7%
4250716 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.60 50.0 4.84e-01 95.1% 89.5%
4016111 604.9.1.0 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.60 47.0 4.88e-01 88.9% 93.3%
3939816 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.60 50.0 4.40e-01 91.4% 89.2%
3999743 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.60 52.0 4.16e-01 96.3% 95.6%
5045957 4156.1.1.0 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.60 53.0 4.08e-01 100.0% 73.0%
3244993 3718.1.1.5 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › Meis_PKNOX_N 0.59 49.0 4.63e-01 93.8% 85.0%
3167709 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.59 49.0 4.40e-01 92.6% 86.1%
3237068 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.59 43.0 3.63e-01 100.0% 43.4%
3672184 3718.1.1.0 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT 0.59 49.0 4.97e-01 92.6% 98.8%
3246978 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 49.0 4.42e-01 92.6% 89.6%
4426232 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.59 42.0 4.13e-01 76.5% 93.3%
3880653 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.58 44.0 3.33e-01 81.5% 56.6%
3601886 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.58 41.0 3.72e-01 74.1% 64.5%
3684480 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 47.0 4.23e-01 91.4% 62.6%
3284785 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.58 45.0 4.15e-01 86.4% 63.6%
3898876 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.58 50.0 4.20e-01 100.0% 99.3%
3240453 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 48.0 4.51e-01 92.6% 99.0%
3800920 3718.1.1.0 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT 0.57 50.0 4.52e-01 100.0% 70.4%
3768254 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.57 50.0 4.79e-01 100.0% 95.8%
3914513 181.1.1.6 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › PCM1_C 0.57 43.0 3.87e-01 82.7% 62.6%
3623144 3718.1.1.5 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › Meis_PKNOX_N 0.56 50.0 4.49e-01 100.0% 70.4%
3191853 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 44.0 3.11e-01 86.4% 47.0%
4681537 3718.1.1.1 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.56 47.0 4.38e-01 91.4% 79.0%
3269335 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.56 48.0 3.61e-01 96.3% 43.3%
4260426 3718.1.1.1 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.56 46.0 4.35e-01 91.4% 79.0%
3975328 3718.1.1.1 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.56 46.0 4.59e-01 91.4% 95.3%
3184698 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.55 40.0 3.84e-01 74.1% 74.4%
3739861 101.1.2.198 alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH 0.55 46.0 4.13e-01 93.8% 75.7%
4365666 1197.1.1.1 alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.55 46.0 3.56e-01 96.3% 75.0%
1144728 604.12.1.2 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.54 43.0 4.12e-01 86.4% 79.8%
3229078 150.5.1.124 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › Claudin_3 0.54 38.0 3.66e-01 74.1% 67.4%
3595069 604.1.1.199 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26165 0.54 40.0 4.28e-01 80.2% 91.4%
3335320 5054.1.1.1 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan 0.54 43.0 4.22e-01 100.0% 78.9%
3683778 611.3.1.0 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.54 43.0 4.06e-01 91.4% 73.3%
4025752 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 42.0 2.77e-01 86.4% 32.6%
4550256 604.12.1.76 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › IspA 0.52 39.0 4.05e-01 84.0% 93.3%
3253225 130.1.1.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.52 40.0 3.99e-01 81.5% 96.5%
3842608 1128.1.1.2 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 0.51 40.0 3.68e-01 81.5% 72.0%