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IMGVR_UViG_3300008268_000037-3300008268-Ga0111491_100070932
Arc-VirIMGVR_UViG_3300008268_000037-3300008268-Ga0111491_100070932
Identity
- Kingdom:
- archaea
Quality
87.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-132_192-203
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g98A00 | 3.10.310.40 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.63 | 35.0 | 3.89e-01 | 73.6% | 68.5% |
| 2zvfA02 | 3.10.310.40 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.62 | 32.0 | 3.68e-01 | 72.9% | 65.1% |
| 1m5hA02 | 3.30.70.520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 41.0 | 4.14e-01 | 72.9% | 97.3% |
| 7ykvB02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.57 | 30.0 | 3.47e-01 | 70.8% | 69.3% |
| 3s1sA01 | 3.90.1570.30 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.54 | 41.0 | 3.95e-01 | 100.0% | 69.2% |
| 3devA02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.51 | 34.0 | 3.73e-01 | 71.5% | 83.6% |
| 4r5qA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.51 | 37.0 | 3.28e-01 | 75.7% | 82.3% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954709 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.71 | 50.0 | 5.26e-01 | 70.8% | 100.0% |
| 5010296 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.64 | 53.0 | 5.00e-01 | 86.8% | 87.6% |
| 3786356 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.63 | 34.0 | 3.80e-01 | 100.0% | 67.3% |
| 4946362 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.60 | 50.0 | 4.50e-01 | 86.8% | 70.0% |
| 5042118 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 43.0 | 4.24e-01 | 100.0% | 69.0% |
| 5080826 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 42.0 | 4.27e-01 | 100.0% | 75.2% |
| 4051669 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.56 | 30.0 | 3.66e-01 | 82.6% | 77.9% |
| 4013029 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 50.0 | 3.96e-01 | 96.5% | 74.5% |
| 3637753 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 47.0 | 3.98e-01 | 91.7% | 83.9% |
| 5018558 | 2008.1.1.162 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30170 | 0.54 | 42.0 | 4.39e-01 | 100.0% | 88.1% |
| 4055099 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.54 | 28.0 | 3.70e-01 | 82.6% | 91.3% |
| 3186526 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 47.0 | 3.79e-01 | 96.5% | 83.1% |
| 4932253 | 2008.1.1.100 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N_2 | 0.54 | 42.0 | 4.28e-01 | 100.0% | 84.1% |
| 3720545 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 45.0 | 3.53e-01 | 91.7% | 80.2% |
| 3601760 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.53 | 28.0 | 3.04e-01 | 85.4% | 60.0% |
| 3208220 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 47.0 | 4.04e-01 | 96.5% | 87.8% |
| 3688346 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 47.0 | 3.95e-01 | 96.5% | 88.5% |
| 3248549 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 44.0 | 4.02e-01 | 89.6% | 82.1% |
| 5029885 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.52 | 36.0 | 3.95e-01 | 70.8% | 87.0% |
| 3200218 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 46.0 | 4.05e-01 | 96.5% | 97.2% |
| 3687623 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 46.0 | 3.58e-01 | 96.5% | 72.3% |
| 5031873 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 41.0 | 4.15e-01 | 100.0% | 84.8% |
| 4941167 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.52 | 30.0 | 3.27e-01 | 100.0% | 66.7% |
| 3204633 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 46.0 | 3.84e-01 | 96.5% | 86.8% |
| 3640734 | 2008.1.1.144 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27653 | 0.51 | 46.0 | 3.58e-01 | 99.3% | 80.9% |
| 3736300 | 2008.1.1.144 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27653 | 0.51 | 46.0 | 3.61e-01 | 99.3% | 78.0% |
| 4297102 | 2007.1.1.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › Peptidase_S51 | 0.50 | 47.0 | 3.52e-01 | 100.0% | 82.6% |
| 3182836 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.50 | 43.0 | 4.10e-01 | 100.0% | 79.4% |
| 4959588 | 2008.1.1.100 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N_2 | 0.50 | 43.0 | 4.17e-01 | 97.2% | 81.8% |
D2
medium
residues 133-191
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dd9D02 | 6.10.140.2060 | Special › Helix non-globular › Helix Hairpins › | 0.82 | 50.0 | 5.74e-01 | 100.0% | 87.8% |
| 2r0rB00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.67 | 48.0 | 4.45e-01 | 81.4% | 59.0% |
| 2uv8A07 | 6.10.140.1410 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 46.0 | 4.06e-01 | 74.6% | 51.8% |
| 2fh5A01 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.65 | 54.0 | 4.36e-01 | 98.3% | 46.7% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.64 | 45.0 | 3.82e-01 | 100.0% | 45.3% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.62 | 54.0 | 3.90e-01 | 100.0% | 60.7% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.62 | 41.0 | 3.64e-01 | 88.1% | 47.7% |
| 2vkzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.60 | 54.0 | 3.45e-01 | 100.0% | 22.9% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.59 | 42.0 | 3.99e-01 | 100.0% | 62.2% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 49.0 | 3.66e-01 | 100.0% | 37.4% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 42.0 | 3.63e-01 | 86.4% | 50.0% |
| 6lumD01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.58 | 42.0 | 3.34e-01 | 78.0% | 38.4% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 40.0 | 3.92e-01 | 79.7% | 68.3% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.57 | 48.0 | 4.61e-01 | 100.0% | 81.5% |
| 1p49A02 | 1.10.287.550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 46.0 | 4.63e-01 | 100.0% | 88.1% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 39.0 | 3.96e-01 | 76.3% | 75.0% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.55 | 45.0 | 3.68e-01 | 100.0% | 49.1% |
| 1lvlA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 48.0 | 3.27e-01 | 100.0% | 37.8% |
| 5tcsA01 | 1.10.418.30 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Ncd80 complex, Ncd80 subunit | 0.55 | 41.0 | 3.41e-01 | 81.4% | 94.5% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 46.0 | 4.09e-01 | 100.0% | 65.4% |
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 45.0 | 3.75e-01 | 100.0% | 52.0% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 47.0 | 3.89e-01 | 100.0% | 54.9% |
| 1u5pA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 41.0 | 3.40e-01 | 100.0% | 45.4% |
| 1b04A03 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.53 | 39.0 | 3.89e-01 | 98.3% | 74.2% |
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.53 | 44.0 | 4.11e-01 | 98.3% | 73.2% |
| 2g38B00 | 1.20.1260.20 | Mainly Alpha › Up-down Bundle › Ferritin › PPE superfamily | 0.53 | 45.0 | 3.21e-01 | 100.0% | 31.8% |
| 1xdiA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 44.0 | 3.08e-01 | 100.0% | 39.0% |
| 1dkxA02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 47.0 | 4.23e-01 | 98.3% | 78.8% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.52 | 44.0 | 4.35e-01 | 100.0% | 85.9% |
| 3m3mA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 38.0 | 3.15e-01 | 81.4% | 81.9% |
| 4ijjB00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.51 | 44.0 | 3.42e-01 | 100.0% | 43.8% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 46.0 | 3.95e-01 | 100.0% | 63.7% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.51 | 46.0 | 4.39e-01 | 100.0% | 89.7% |
| 2kseA00 | 1.20.5.1040 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Sensor protein qsec. | 0.50 | 40.0 | 3.84e-01 | 98.3% | 75.3% |
| 1a36A04 | 1.10.132.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.50 | 46.0 | 3.22e-01 | 100.0% | 36.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3742218 | 4336.2.1.3 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › COMPASS-Shg1 | 0.74 | 63.0 | 5.64e-01 | 100.0% | 67.1% |
| 3781679 | 4336.2.1.3 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › COMPASS-Shg1 | 0.73 | 62.0 | 5.10e-01 | 96.6% | 51.8% |
| 4971062 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.63 | 45.0 | 3.95e-01 | 74.6% | 51.8% |
| 4959191 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.62 | 48.0 | 4.20e-01 | 100.0% | 55.6% |
| 4189213 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.62 | 53.0 | 4.97e-01 | 100.0% | 88.0% |
| 3605868 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.62 | 54.0 | 4.44e-01 | 100.0% | 53.6% |
| 3904078 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.61 | 46.0 | 4.37e-01 | 100.0% | 67.1% |
| 3496789 | 5054.1.1.17 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TRAM_LAG1_CLN8 | 0.61 | 53.0 | 3.47e-01 | 98.3% | 55.7% |
| 4980120 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.59 | 50.0 | 4.40e-01 | 100.0% | 63.3% |
| 3591755 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.58 | 42.0 | 3.64e-01 | 81.4% | 50.0% |
| 3882744 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.57 | 45.0 | 3.35e-01 | 86.4% | 66.5% |
| 4034278 | 5043.1.1.0 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like | 0.56 | 47.0 | 4.76e-01 | 94.9% | 93.3% |
| 4610596 | 5043.1.1.0 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like | 0.55 | 49.0 | 4.76e-01 | 100.0% | 92.3% |
| 3589789 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.55 | 46.0 | 4.63e-01 | 98.3% | 95.0% |
| 3973899 | 5086.1.1.92 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE | 0.54 | 47.0 | 3.53e-01 | 98.3% | 95.9% |
| 3906467 | 1008.1.1.106 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › CSN5_C | 0.53 | 47.0 | 4.07e-01 | 100.0% | 63.3% |
| 3410128 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.52 | 45.0 | 4.42e-01 | 96.6% | 86.2% |
| 222846 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.52 | 45.0 | 3.90e-01 | 100.0% | 62.4% |
| 375927 | 150.1.1.14 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › EncFtn-like | 0.51 | 47.0 | 3.94e-01 | 100.0% | 63.0% |
| 5055960 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.50 | 44.0 | 3.53e-01 | 100.0% | 55.0% |