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IMGVR_UViG_3300008523_000017-3300008523-Ga0115231_10005811
Arc-VirIMGVR_UViG_3300008523_000017-3300008523-Ga0115231_10005811
Identity
- Kingdom:
- archaea
Quality
79.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-63
Domain cluster:
rep: IMGVR_UViG_3300029822_000014-3300029822-Ga0134854_100051527__D106-151
D2
high
residues 213-308
Domain cluster:
rep: OR521085.1__WNO28334.1__SEA_PSONYX_24__00024__D30-132
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f0cA02 | 2.60.40.1830 | Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain | 0.77 | 70.0 | 6.89e-01 | 100.0% | 93.3% |
| 2bseA00 | 2.60.40.1830 | Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain | 0.77 | 70.0 | 6.78e-01 | 100.0% | 92.5% |
| 4mbrA01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.72 | 61.0 | 5.30e-01 | 93.8% | 72.7% |
| 4mboA01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.71 | 60.0 | 5.21e-01 | 94.8% | 73.5% |
| 2wc7A02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.70 | 50.0 | 5.42e-01 | 99.0% | 91.1% |
| 4b60A01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.69 | 60.0 | 5.26e-01 | 94.8% | 74.8% |
| 3edfA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.69 | 53.0 | 5.74e-01 | 100.0% | 98.8% |
| 1uokA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.69 | 53.0 | 5.73e-01 | 100.0% | 100.0% |
| 1cgtA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.68 | 56.0 | 5.69e-01 | 100.0% | 90.4% |
| 2bhzA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.68 | 47.0 | 5.29e-01 | 99.0% | 95.8% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.67 | 60.0 | 5.33e-01 | 100.0% | 94.2% |
| 1m53A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.67 | 51.0 | 5.52e-01 | 100.0% | 100.0% |
| 2bzvA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.67 | 60.0 | 5.26e-01 | 100.0% | 97.3% |
| 3aj7A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.67 | 50.0 | 5.47e-01 | 100.0% | 98.7% |
| 4e2oA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.67 | 51.0 | 5.35e-01 | 100.0% | 90.9% |
| 2ze0A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.66 | 51.0 | 5.49e-01 | 100.0% | 98.7% |
| 5zceA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.66 | 50.0 | 5.52e-01 | 100.0% | 100.0% |
| 1wzlA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.65 | 52.0 | 5.48e-01 | 100.0% | 98.8% |
| 2w4yA00 | 2.40.160.220 | Mainly Beta › Beta Barrel › Porin › | 0.65 | 35.0 | 3.23e-01 | 100.0% | 41.8% |
| 7jjtA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.65 | 51.0 | 5.34e-01 | 100.0% | 93.2% |
| 3wy2A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.64 | 46.0 | 5.02e-01 | 100.0% | 98.6% |
| 4dlqA03 | 2.60.220.50 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › | 0.63 | 41.0 | 3.25e-01 | 92.7% | 32.3% |
| 1wzaA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.61 | 46.0 | 4.98e-01 | 100.0% | 98.7% |
| 4mtmA01 | 2.60.40.3940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 54.0 | 5.48e-01 | 100.0% | 100.0% |
| 3zssA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.61 | 52.0 | 5.41e-01 | 100.0% | 100.0% |
| 5e1qA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.61 | 54.0 | 5.40e-01 | 100.0% | 97.9% |
| 1j0hA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.61 | 47.0 | 4.99e-01 | 100.0% | 96.4% |
| 4aeeA05 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.60 | 39.0 | 4.51e-01 | 100.0% | 94.0% |
| 6phxA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.60 | 51.0 | 5.20e-01 | 100.0% | 94.7% |
| 3kl0D01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.60 | 53.0 | 5.14e-01 | 100.0% | 90.6% |
| 3k0yA02 | 2.60.40.2370 | Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain | 0.59 | 40.0 | 3.61e-01 | 91.7% | 50.4% |
| 3qwnA02 | 2.60.40.2370 | Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain | 0.59 | 40.0 | 3.62e-01 | 91.7% | 50.7% |
| 1mrzB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.58 | 42.0 | 4.03e-01 | 77.1% | 67.0% |
| 2d73A01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.57 | 49.0 | 3.52e-01 | 94.8% | 84.5% |
| 1pzsA00 | 2.60.40.200 | Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain | 0.56 | 46.0 | 3.91e-01 | 92.7% | 95.3% |
| 3r1kA03 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.56 | 39.0 | 3.92e-01 | 71.9% | 91.7% |
| 6z9cA01 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.56 | 46.0 | 4.35e-01 | 93.8% | 93.4% |
| 4fgmA01 | 2.60.40.3650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 45.0 | 3.79e-01 | 90.6% | 50.6% |
| 3h7jA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 47.0 | 4.54e-01 | 100.0% | 85.5% |
| 5zbeA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 47.0 | 4.56e-01 | 100.0% | 87.9% |
| 4ok4A02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 45.0 | 3.16e-01 | 100.0% | 76.2% |
| 3rnsA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 41.0 | 4.13e-01 | 92.7% | 86.0% |
| 4w6yA00 | 2.60.120.1210 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 43.0 | 3.90e-01 | 100.0% | 75.3% |
| 3ap9A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 42.0 | 3.72e-01 | 94.8% | 90.7% |
| 1qu0C00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 39.0 | 3.26e-01 | 84.4% | 76.5% |
| 3dcdA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 46.0 | 3.23e-01 | 100.0% | 67.6% |
| 1h54B01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.50 | 45.0 | 3.30e-01 | 100.0% | 53.5% |
| 4e2gC00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 45.0 | 4.12e-01 | 100.0% | 87.3% |
| 1jv2B04 | 4.10.1240.30 | Few Secondary Structures › Irregular › Hormone receptor fold › | 0.50 | 35.0 | 3.73e-01 | 72.9% | 96.5% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588403 | 5092.1.1.0 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins | 0.81 | 75.0 | 7.32e-01 | 100.0% | 97.1% |
| 961561 | 5092.1.1.4 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP | 0.77 | 70.0 | 6.89e-01 | 100.0% | 94.2% |
| 1121044 | 11.1.5.48 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Big_8 | 0.71 | 61.0 | 5.27e-01 | 94.8% | 74.2% |
| 3667081 | 12.1.1.36 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GHD | 0.71 | 42.0 | 4.69e-01 | 100.0% | 76.0% |
| 1168355 | 11.1.5.48 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Big_8 | 0.71 | 60.0 | 5.19e-01 | 94.8% | 73.0% |
| 5026277 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.68 | 42.0 | 5.20e-01 | 100.0% | 100.0% |
| 1965 | 12.1.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C | 0.68 | 56.0 | 5.77e-01 | 100.0% | 96.6% |
| 2491361 | 5092.1.1.0 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins | 0.66 | 59.0 | 5.33e-01 | 100.0% | 97.7% |
| 4021361 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.66 | 54.0 | 5.56e-01 | 100.0% | 95.5% |
| 2756505 | 12.1.1.75 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › SusG_C | 0.64 | 52.0 | 5.40e-01 | 100.0% | 97.7% |
| 3367441 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 43.0 | 4.27e-01 | 100.0% | 67.7% |
| 5053995 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.62 | 45.0 | 4.88e-01 | 92.7% | 97.3% |
| 1839945 | 4182.1.1.3 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C | 0.61 | 54.0 | 5.46e-01 | 100.0% | 99.0% |
| 3987517 | 12.1.1.27 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_36C | 0.60 | 51.0 | 5.21e-01 | 100.0% | 94.7% |
| 3245986 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.59 | 45.0 | 3.45e-01 | 82.3% | 43.0% |
| 3219318 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.57 | 44.0 | 3.15e-01 | 83.3% | 33.7% |
| 3990433 | 10.32.1.209 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MGAT4A_C | 0.57 | 49.0 | 4.46e-01 | 100.0% | 76.3% |
| 3211832 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 43.0 | 3.09e-01 | 82.3% | 36.9% |
| 5070958 | 10.1.1.41 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 | 0.55 | 47.0 | 3.83e-01 | 100.0% | 92.5% |
| 1769854 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.54 | 48.0 | 4.47e-01 | 100.0% | 78.5% |
| 5065774 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.54 | 45.0 | 4.50e-01 | 100.0% | 91.0% |
| 4224331 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.53 | 48.0 | 4.11e-01 | 100.0% | 69.3% |
| 3574360 | 5.1.3.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid | 0.53 | 41.0 | 2.98e-01 | 85.4% | 39.3% |
| 4929797 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.53 | 32.0 | 3.84e-01 | 88.5% | 100.0% |
| 3214491 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.53 | 47.0 | 3.95e-01 | 97.9% | 62.5% |
| 3740616 | 11.1.3.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like | 0.52 | 45.0 | 4.00e-01 | 100.0% | 66.7% |
| 4961736 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.52 | 47.0 | 4.41e-01 | 100.0% | 89.6% |
| 3222982 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.52 | 46.0 | 4.01e-01 | 99.0% | 67.3% |
| 3492090 | 11.1.3.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › Sod_Cu | 0.52 | 46.0 | 3.98e-01 | 100.0% | 66.0% |
| 148966 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.52 | 44.0 | 4.16e-01 | 99.0% | 79.1% |
| 3212908 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.51 | 46.0 | 4.04e-01 | 100.0% | 68.3% |
| 3283603 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 4.27e-01 | 85.4% | 97.6% |
| 3795098 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.51 | 45.0 | 3.83e-01 | 97.9% | 62.5% |
| 4947251 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.50 | 38.0 | 3.61e-01 | 92.7% | 67.0% |
| 3221490 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.50 | 45.0 | 3.90e-01 | 100.0% | 69.3% |
| 4609835 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.50 | 46.0 | 3.20e-01 | 100.0% | 68.2% |