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IMGVR_UViG_3300008622_000017-3300008622-Ga0111363_1001361

Arc-Vir

IMGVR_UViG_3300008622_000017-3300008622-Ga0111363_1001361

Identity

Kingdom:
archaea

Quality

83.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-40
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.73 52.0 4.66e-01 100.0% 52.9%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.70 48.0 4.29e-01 100.0% 47.3%
5z0uA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.68 50.0 3.78e-01 100.0% 31.1%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.68 47.0 4.56e-01 100.0% 62.8%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 48.0 4.16e-01 85.7% 48.2%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 44.0 2.71e-01 85.7% 10.4%
2bm0A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 49.0 3.55e-01 85.7% 63.1%
6y48D01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 48.0 2.94e-01 100.0% 38.9%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.64 52.0 3.96e-01 94.3% 72.4%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.63 50.0 3.78e-01 94.3% 68.8%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 44.0 2.57e-01 77.1% 32.9%
1nqlB00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.62 42.0 3.84e-01 85.7% 50.0%
1cdwA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.61 47.0 3.73e-01 94.3% 74.4%
6yllA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 45.0 3.61e-01 88.6% 87.8%
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 43.0 4.07e-01 88.6% 61.9%
2bm0A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.60 43.0 3.94e-01 82.9% 92.2%
3bwnD01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 44.0 3.04e-01 88.6% 66.7%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 43.0 3.70e-01 85.7% 47.4%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 44.0 3.15e-01 88.6% 37.7%
3x3mA01 3.30.2390.20 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › Type VII secretion system EccB, repeat 1 domain 0.58 40.0 3.17e-01 97.1% 30.5%
3mqgA02 2.20.70.110 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 39.0 3.84e-01 100.0% 61.5%
2x3lA01 3.90.1150.150 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.56 41.0 3.13e-01 88.6% 77.1%
3hkoA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 41.0 2.58e-01 88.6% 19.0%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 46.0 3.41e-01 100.0% 44.0%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 40.0 3.93e-01 88.6% 66.7%
1tolA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.53 38.0 3.00e-01 80.0% 57.3%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 46.0 3.66e-01 100.0% 83.6%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.53 37.0 2.97e-01 80.0% 47.7%
1e6vC00 3.90.320.20 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › Methyl-coenzyme M reductase, gamma subunit 0.52 44.0 2.66e-01 85.7% 11.3%
3sqiA02 1.10.443.20 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Centromere DNA-binding protein complex CBF3 subunit, domain 2 0.52 37.0 2.29e-01 88.6% 47.2%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.51 37.0 2.80e-01 97.1% 84.3%
6j5yA00 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.50 35.0 2.22e-01 80.0% 81.5%
5teaB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.50 36.0 2.50e-01 100.0% 39.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3791383 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 48.0 3.50e-01 85.7% 25.3%
3245395 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.69 53.0 3.07e-01 91.4% 28.6%
3476114 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.69 46.0 2.58e-01 85.7% 5.7%
4983462 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.68 51.0 4.26e-01 85.7% 47.7%
3415739 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.67 46.0 4.60e-01 88.6% 71.4%
3271846 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.65 48.0 4.26e-01 94.3% 52.7%
3391894 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.65 51.0 3.99e-01 85.7% 42.9%
3620016 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 50.0 4.32e-01 88.6% 56.4%
3702861 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.62 42.0 3.69e-01 88.6% 45.5%
5028514 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.62 51.0 4.43e-01 100.0% 76.7%
5071089 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 50.0 4.50e-01 100.0% 64.0%
3226023 3156.1.1.9 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 0.61 46.0 2.88e-01 88.6% 14.5%
3800988 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.61 40.0 3.61e-01 80.0% 42.9%
3593875 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 41.0 3.66e-01 88.6% 45.5%
3393502 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 50.0 3.67e-01 91.4% 65.3%
4018649 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.61 47.0 3.76e-01 85.7% 42.9%
3906671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.79e-01 94.3% 82.5%
3396514 386.1.1.259 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 0.61 43.0 3.98e-01 88.6% 55.6%
3511007 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.61 48.0 3.35e-01 88.6% 42.5%
3416458 386.1.1.259 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 0.60 42.0 3.99e-01 88.6% 55.6%
5069323 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 51.0 4.64e-01 100.0% 90.0%
3225850 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.60 41.0 3.72e-01 85.7% 44.0%
3253246 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.60 41.0 4.30e-01 88.6% 83.3%
3189994 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.59 40.0 3.07e-01 88.6% 27.8%
3398074 11.1.1.822 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 0.59 49.0 3.36e-01 88.6% 55.8%
4600912 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 49.0 3.35e-01 94.3% 36.2%
None — 0.59 41.0 3.62e-01 85.7% 45.3%
3766059 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.59 43.0 4.19e-01 85.7% 61.5%
4991056 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.58 47.0 4.22e-01 100.0% 80.0%
3821170 319.1.1.15 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF27746 0.58 46.0 3.39e-01 97.1% 80.0%
3487913 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 43.0 3.31e-01 85.7% 35.3%
3395736 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.57 43.0 3.68e-01 85.7% 50.0%
3205939 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.57 46.0 4.06e-01 100.0% 94.8%
3391912 11.1.1.822 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 0.57 44.0 3.35e-01 88.6% 60.0%
3503984 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.57 38.0 3.72e-01 85.7% 60.0%
4641081 391.1.2.18 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › TILa 0.56 43.0 3.83e-01 100.0% 58.2%
4551207 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.56 46.0 3.29e-01 94.3% 42.7%
3556029 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.56 48.0 3.28e-01 100.0% 42.3%
3473306 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.56 42.0 3.37e-01 85.7% 40.0%
4665981 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 43.0 3.19e-01 94.3% 44.8%
4139173 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 42.0 3.12e-01 88.6% 50.0%
3648086 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.55 46.0 3.17e-01 100.0% 41.5%
3501569 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.55 47.0 3.28e-01 100.0% 42.4%
4278212 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.55 46.0 3.19e-01 100.0% 41.5%
5077837 304.139.1.1 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR 0.54 39.0 2.42e-01 85.7% 14.5%
4026369 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.53 40.0 3.27e-01 82.9% 64.3%
4029670 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.53 45.0 3.17e-01 100.0% 42.4%
4379241 375.1.1.8 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HypA 0.53 38.0 3.67e-01 77.1% 67.5%
3791940 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 35.0 2.72e-01 85.7% 26.0%
4996195 304.39.1.6 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_2nd 0.52 40.0 3.59e-01 100.0% 55.0%
3402758 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.51 35.0 3.38e-01 82.9% 50.0%
4032577 2002.1.1.52 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Peptidase_U32 0.51 38.0 2.35e-01 100.0% 15.4%