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IMGVR_UViG_3300008622_000017-3300008622-Ga0111363_10013672

Arc-Vir

IMGVR_UViG_3300008622_000017-3300008622-Ga0111363_10013672

Identity

Kingdom:
archaea

Quality

95.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 509-610
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8bxrA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.81e-01 73.5% 83.2%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5067673 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 35.0 4.13e-01 74.5% 86.2%
2538670 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 24.0 3.21e-01 71.6% 70.4%
D2 medium residues 1-129
PDB
Domain cluster: rep: NC_069754.1__YP_010598122.1__PM408_gp38__00038__D35-163
D3 medium residues 130-206
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 51.0 4.22e-01 100.0% 91.2%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 50.0 4.11e-01 100.0% 86.4%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 48.0 4.04e-01 100.0% 90.5%
3fm5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 47.0 3.99e-01 100.0% 85.4%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4942830 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.62 53.0 3.61e-01 97.4% 56.7%
3611289 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.60 42.0 3.44e-01 74.0% 71.7%
3476824 633.29.1.0 ↗ alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 0.58 45.0 3.58e-01 83.1% 65.0%
3591691 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 42.0 4.00e-01 93.5% 66.3%
3988812 614.1.1.27 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › DDE_Tnp_1 0.56 39.0 3.88e-01 75.3% 70.0%
3232051 604.33.1.0 ↗ alpha bundles › Spectrin repeat-like › Repulsive guidance molecule (RGM) N-terminal domain › Repulsive guidance molecule (RGM) N-terminal domain 0.56 44.0 3.29e-01 97.4% 33.8%
3955295 2007.1.19.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin 0.52 45.0 2.68e-01 97.4% 70.8%
3496163 109.35.1.14 ↗ alpha superhelices › Repetitive alpha hairpins › Proteasome/cyclosome (PC) repeat › Proteasome/cyclosome (PC) repeat › PC_rep, HEAT_2, RPN2_N 0.52 41.0 2.32e-01 84.4% 52.0%
D4 medium residues 207-288_315-390
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4x5mA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.63 29.0 3.95e-01 98.7% 82.6%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.62 30.0 4.06e-01 98.7% 86.7%
3rklA00 6.10.140.1640 Special › Helix non-globular › Helix Hairpins › 0.62 26.0 3.53e-01 98.1% 73.8%
5zjgA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.51 24.0 2.87e-01 84.8% 62.5%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3699643 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.66 31.0 4.24e-01 96.8% 84.7%
3245192 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.65 31.0 4.15e-01 96.8% 83.5%
4959463 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.65 31.0 4.25e-01 98.7% 88.7%
3210969 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.65 32.0 4.08e-01 98.7% 78.9%
4461958 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.63 56.0 4.84e-01 98.7% 61.7%
3938825 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.63 31.0 4.15e-01 98.7% 88.2%
4651639 2484.1.1.36 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.57 53.0 3.98e-01 100.0% 60.8%
D5 medium residues 289-314_391-473
PDB
Domain cluster: rep: IMGVR_UViG_3300016457_001358-3300016457-Ga0186713_11630063__D4-82