←Back to structures
IMGVR_UViG_3300008716_000068-3300008716-Ga0113874_10299512
Arc-VirIMGVR_UViG_3300008716_000068-3300008716-Ga0113874_10299512
Identity
- Kingdom:
- archaea
Quality
86.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 104-156
Domain cluster:
rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_10000072181__D164-213
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07453.20 best | NUMOD1 | 23.8 | 5.90e-05 | 66.0% | 89.2% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.84 | 70.0 | 6.41e-01 | 100.0% | 70.6% |
| 3kjxD01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 45.0 | 4.33e-01 | 75.5% | 77.0% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.54 | 42.0 | 4.50e-01 | 92.5% | 97.8% |
| 3ckjA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.54 | 44.0 | 2.85e-01 | 100.0% | 73.7% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 43.0 | 3.41e-01 | 100.0% | 86.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4384880 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.85 | 74.0 | 6.23e-01 | 100.0% | 58.8% |
| 4414927 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.82 | 68.0 | 6.23e-01 | 100.0% | 71.0% |
| 3587703 | 101.1.14.0 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases | 0.81 | 65.0 | 6.68e-01 | 100.0% | 94.0% |
| 3171408 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.79 | 64.0 | 6.53e-01 | 98.1% | 96.0% |
| 4519945 | 101.1.14.4 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 | 0.73 | 66.0 | 6.60e-01 | 100.0% | 98.1% |
| 3581875 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.61 | 41.0 | 2.49e-01 | 71.7% | 52.1% |
| 4943773 | 297.1.1.2 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Sua5_yciO_yrdC | 0.60 | 50.0 | 3.43e-01 | 100.0% | 81.4% |
| 3413357 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.53 | 43.0 | 3.95e-01 | 88.7% | 68.6% |