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IMGVR_UViG_3300008953_000112-3300008953-Ga0104241_10003109
Arc-VirIMGVR_UViG_3300008953_000112-3300008953-Ga0104241_10003109
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 43-119
Domain cluster:
rep: MK448710.1__QBX16110.1__Javan233_0030__00030__D34-99
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09643.16 best | YopX | 40.7 | 3.30e-10 | 100.0% | 56.2% |
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ox7A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.74 | 60.0 | 6.33e-01 | 90.9% | 94.2% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 52.0 | 5.95e-01 | 85.7% | 100.0% |
| 3nrlA00 | 2.40.10.390 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.69 | 47.0 | 5.00e-01 | 84.4% | 80.9% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 46.0 | 5.25e-01 | 81.8% | 100.0% |
| 1tg0A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 49.0 | 5.22e-01 | 79.2% | 100.0% |
| 2gzbB00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.63 | 51.0 | 4.05e-01 | 88.3% | 98.2% |
| 2p4tA00 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 45.0 | 5.13e-01 | 88.3% | 100.0% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 51.0 | 5.17e-01 | 93.5% | 90.9% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 43.0 | 4.61e-01 | 84.4% | 85.9% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 50.0 | 5.24e-01 | 89.6% | 95.8% |
| 3pieB05 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 46.0 | 4.96e-01 | 85.7% | 96.9% |
| 1v1cA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 47.0 | 4.97e-01 | 84.4% | 100.0% |
| 1fx7B03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.60 | 46.0 | 4.63e-01 | 85.7% | 100.0% |
| 1qxmA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.60 | 47.0 | 3.89e-01 | 87.0% | 99.3% |
| 5z8lA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.59 | 53.0 | 4.60e-01 | 100.0% | 89.9% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 45.0 | 4.85e-01 | 80.5% | 100.0% |
| 1v5pA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 43.0 | 3.93e-01 | 77.9% | 89.3% |
| 4ft4B01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.59 | 52.0 | 4.22e-01 | 100.0% | 77.3% |
| 1whlA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.58 | 48.0 | 4.48e-01 | 89.6% | 93.7% |
| 7cceA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.58 | 51.0 | 4.13e-01 | 100.0% | 72.8% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 47.0 | 4.84e-01 | 87.0% | 95.8% |
| 1w4sA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.57 | 48.0 | 3.87e-01 | 90.9% | 70.5% |
| 2yrvA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 47.0 | 4.17e-01 | 90.9% | 78.8% |
| 2kymA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 43.0 | 4.07e-01 | 83.1% | 67.7% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 40.0 | 4.11e-01 | 88.3% | 80.6% |
| 3fssA01 | 2.30.29.120 | Mainly Beta › Roll › PH-domain like › | 0.56 | 42.0 | 3.58e-01 | 81.8% | 73.5% |
| 1wjsA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 47.0 | 4.05e-01 | 94.8% | 71.7% |
| 3cp3A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 41.0 | 3.49e-01 | 77.9% | 94.5% |
| 4cshA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.55 | 45.0 | 3.65e-01 | 93.5% | 43.9% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 39.0 | 4.32e-01 | 75.3% | 93.5% |
| 3kstA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 43.0 | 2.95e-01 | 85.7% | 82.5% |
| 3h6zA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 48.0 | 4.25e-01 | 98.7% | 85.7% |
| 2dhkA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 40.0 | 3.75e-01 | 80.5% | 82.0% |
| 2d9wA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 39.0 | 3.56e-01 | 77.9% | 87.3% |
| 2kdsA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 46.0 | 4.53e-01 | 98.7% | 97.7% |
| 6ijfC01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.54 | 39.0 | 3.73e-01 | 90.9% | 65.6% |
| 3ef2A02 | 3.30.460.70 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.53 | 42.0 | 3.57e-01 | 89.6% | 91.3% |
| 4q8gA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 41.0 | 2.79e-01 | 90.9% | 45.9% |
| 3l6pA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 35.0 | 3.24e-01 | 71.4% | 99.0% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.50 | 43.0 | 4.06e-01 | 97.4% | 83.9% |
| 3by7E00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 38.0 | 3.88e-01 | 83.1% | 90.8% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3302829 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.75 | 57.0 | 6.22e-01 | 88.3% | 95.4% |
| 959119 | 4.1.1.75 ↗ | beta barrels › SH3 › SH3 › SH3 › NdhS | 0.73 | 50.0 | 5.82e-01 | 76.6% | 100.0% |
| 3296865 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.72 | 58.0 | 5.22e-01 | 94.8% | 62.9% |
| 3456496 | 4.1.1.75 ↗ | beta barrels › SH3 › SH3 › SH3 › NdhS | 0.72 | 56.0 | 4.88e-01 | 94.8% | 55.7% |
| 3675511 | 4.1.1.75 ↗ | beta barrels › SH3 › SH3 › SH3 › NdhS | 0.70 | 57.0 | 5.62e-01 | 94.8% | 83.7% |
| 4964768 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 50.0 | 5.63e-01 | 87.0% | 100.0% |
| 4271974 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.68 | 50.0 | 5.44e-01 | 87.0% | 93.8% |
| 4605602 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 51.0 | 5.58e-01 | 87.0% | 96.9% |
| 3502388 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 46.0 | 4.71e-01 | 81.8% | 74.7% |
| 3502290 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 46.0 | 5.05e-01 | 81.8% | 93.3% |
| 1889033 | 2004.1.1.203 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 | 0.65 | 54.0 | 3.74e-01 | 90.9% | 29.6% |
| 4874232 | 4.1.1.29 ↗ | beta barrels › SH3 › SH3 › SH3 › PSI_PsaE | 0.65 | 49.0 | 5.12e-01 | 79.2% | 100.0% |
| 3510676 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 47.0 | 4.44e-01 | 92.2% | 63.2% |
| 3448975 | 4.1.1.66 ↗ | beta barrels › SH3 › SH3 › SH3 › LBR_tudor | 0.64 | 48.0 | 5.12e-01 | 79.2% | 96.9% |
| 4027263 | 4.1.1.104 ↗ | beta barrels › SH3 › SH3 › SH3 › KN17_SH3 | 0.64 | 55.0 | 4.66e-01 | 92.2% | 100.0% |
| 3623785 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.63 | 46.0 | 4.69e-01 | 76.6% | 85.3% |
| 3508441 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.63 | 52.0 | 4.88e-01 | 96.1% | 73.7% |
| 5073368 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 50.0 | 5.23e-01 | 90.9% | 94.3% |
| 3464886 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.62 | 45.0 | 5.01e-01 | 88.3% | 98.3% |
| 3908017 | 4.1.1.253 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4537 | 0.62 | 49.0 | 4.86e-01 | 84.4% | 87.5% |
| 3457163 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.62 | 48.0 | 4.76e-01 | 84.4% | 78.8% |
| 3301015 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 49.0 | 5.22e-01 | 89.6% | 100.0% |
| 3578333 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.61 | 46.0 | 4.40e-01 | 81.8% | 87.1% |
| 3826751 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.61 | 47.0 | 4.65e-01 | 81.8% | 83.7% |
| 3933047 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.61 | 49.0 | 3.87e-01 | 87.0% | 76.9% |
| 4888987 | 4.1.1.6 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C | 0.61 | 49.0 | 5.20e-01 | 88.3% | 97.1% |
| 3780847 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.61 | 49.0 | 3.95e-01 | 88.3% | 71.3% |
| 3738332 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.60 | 54.0 | 4.20e-01 | 100.0% | 66.1% |
| 3660964 | 4.1.1.6 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C | 0.60 | 51.0 | 4.64e-01 | 92.2% | 70.0% |
| 3926120 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.60 | 48.0 | 3.87e-01 | 85.7% | 45.5% |
| 3592541 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 48.0 | 4.81e-01 | 97.4% | 83.7% |
| 2675820 | 4.1.1.93 ↗ | beta barrels › SH3 › SH3 › SH3 › 40S_S4_C | 0.60 | 49.0 | 4.66e-01 | 88.3% | 74.7% |
| 3471154 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.60 | 44.0 | 3.80e-01 | 77.9% | 80.0% |
| 3351118 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 50.0 | 3.88e-01 | 93.5% | 84.6% |
| 3566631 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.59 | 45.0 | 4.50e-01 | 80.5% | 81.2% |
| 3826545 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.59 | 51.0 | 4.60e-01 | 96.1% | 99.0% |
| 3291157 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.59 | 48.0 | 3.97e-01 | 89.6% | 50.0% |
| 4218488 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.59 | 46.0 | 4.58e-01 | 83.1% | 82.5% |
| 3176049 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.59 | 46.0 | 4.87e-01 | 93.5% | 95.7% |
| 3310577 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.58 | 51.0 | 4.70e-01 | 97.4% | 97.0% |
| 3323474 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.58 | 50.0 | 4.74e-01 | 96.1% | 92.2% |
| 3917645 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 43.0 | 3.77e-01 | 81.8% | 85.0% |
| 3725283 | 4.1.1.146 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_uL24m-like | 0.57 | 49.0 | 3.20e-01 | 92.2% | 50.3% |
| 3548074 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.57 | 41.0 | 3.62e-01 | 77.9% | 75.8% |
| 3831409 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.57 | 49.0 | 4.54e-01 | 97.4% | 97.0% |
| 3815495 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.56 | 44.0 | 4.60e-01 | 87.0% | 92.9% |
| 3698762 | 4.1.1.6 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C | 0.56 | 40.0 | 3.75e-01 | 90.9% | 58.3% |
| 3272546 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.56 | 40.0 | 3.53e-01 | 77.9% | 76.0% |
| 3971321 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.55 | 44.0 | 4.57e-01 | 93.5% | 100.0% |
| 3434094 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.54 | 48.0 | 4.50e-01 | 100.0% | 100.0% |
| 4997723 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.54 | 38.0 | 3.06e-01 | 74.0% | 92.3% |
| 3325360 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 40.0 | 4.21e-01 | 89.6% | 89.9% |
| 3886040 | 375.1.1.9 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom | 0.54 | 38.0 | 3.47e-01 | 72.7% | 90.0% |
| 5004573 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.52 | 39.0 | 3.18e-01 | 80.5% | 87.9% |
| 4944685 | 1.1.5.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 | 0.52 | 36.0 | 2.99e-01 | 74.0% | 94.7% |
| 5029261 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.51 | 39.0 | 3.26e-01 | 87.0% | 52.0% |
| 4204262 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.50 | 43.0 | 3.53e-01 | 100.0% | 98.1% |