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IMGVR_UViG_3300008993_000404-3300008993-Ga0104258_10071841
Arc-VirIMGVR_UViG_3300008993_000404-3300008993-Ga0104258_10071841
Identity
- Kingdom:
- archaea
Quality
79.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 112-213
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.74 | 50.0 | 4.98e-01 | 93.1% | 68.0% |
| 4oe8C00 | 1.10.8.1170 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.72 | 38.0 | 4.18e-01 | 76.5% | 62.1% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.71 | 53.0 | 4.83e-01 | 100.0% | 59.3% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.70 | 40.0 | 4.52e-01 | 93.1% | 74.0% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.69 | 41.0 | 4.47e-01 | 100.0% | 70.1% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 41.0 | 4.81e-01 | 99.0% | 91.0% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.67 | 47.0 | 4.50e-01 | 87.3% | 62.9% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.67 | 39.0 | 4.16e-01 | 90.2% | 66.3% |
| 1h7cA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 48.0 | 4.88e-01 | 100.0% | 75.7% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.65 | 49.0 | 4.96e-01 | 100.0% | 80.0% |
| 3a98A02 | 1.20.1270.350 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain | 0.64 | 36.0 | 3.89e-01 | 79.4% | 63.2% |
| 2dt5B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 34.0 | 3.84e-01 | 70.6% | 68.5% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.64 | 51.0 | 5.44e-01 | 100.0% | 98.9% |
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.61 | 40.0 | 4.10e-01 | 97.1% | 68.8% |
| 2zueA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.60 | 36.0 | 3.43e-01 | 83.3% | 49.6% |
| 3q5dA02 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.59 | 41.0 | 4.19e-01 | 86.3% | 74.2% |
| 5xdcB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.59 | 34.0 | 3.33e-01 | 78.4% | 51.4% |
| 5ysmA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 45.0 | 3.11e-01 | 83.3% | 71.4% |
| 2odvA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 41.0 | 4.01e-01 | 99.0% | 67.9% |
| 2ieqA00 | 1.20.5.300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 46.0 | 4.86e-01 | 99.0% | 100.0% |
| 3vouB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 45.0 | 4.07e-01 | 92.2% | 62.5% |
| 1fewA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 49.0 | 4.12e-01 | 96.1% | 57.2% |
| 8cdaC01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.55 | 34.0 | 3.31e-01 | 78.4% | 53.0% |
| 1fs0G02 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.55 | 43.0 | 4.60e-01 | 96.1% | 100.0% |
| 6f0cA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 44.0 | 3.01e-01 | 90.2% | 36.8% |
| 2rd0B00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 47.0 | 4.24e-01 | 99.0% | 71.2% |
| 3swhA01 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.51 | 43.0 | 3.68e-01 | 91.2% | 83.0% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 38.0 | 3.46e-01 | 81.4% | 56.2% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 44.0 | 4.42e-01 | 93.1% | 92.2% |
| 6ks6q01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.51 | 40.0 | 2.99e-01 | 85.3% | 54.6% |
| 4aidA02 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.51 | 34.0 | 3.75e-01 | 70.6% | 86.6% |
| 4nphA02 | 1.20.1270.330 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.50 | 32.0 | 3.66e-01 | 81.4% | 87.8% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3578534 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.79 | 45.0 | 4.53e-01 | 100.0% | 55.2% |
| 5066847 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.78 | 45.0 | 4.80e-01 | 82.4% | 65.6% |
| 3516980 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.75 | 46.0 | 4.32e-01 | 92.2% | 50.4% |
| 3171735 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.74 | 44.0 | 4.53e-01 | 91.2% | 63.2% |
| 3633174 | 604.1.1.55 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › RasGAP_C | 0.73 | 43.0 | 4.34e-01 | 83.3% | 59.0% |
| 3720884 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.73 | 62.0 | 5.40e-01 | 95.1% | 62.0% |
| 4949603 | 3718.1.1.34 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › PF26161 | 0.73 | 41.0 | 4.42e-01 | 96.1% | 65.9% |
| 4956714 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.72 | 41.0 | 4.28e-01 | 96.1% | 60.0% |
| 5073702 | 633.29.1.13 ↗ | alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 › DUF2096_N | 0.71 | 42.0 | 4.26e-01 | 91.2% | 59.0% |
| 3972478 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.71 | 44.0 | 4.21e-01 | 100.0% | 53.8% |
| 3367387 | 604.5.1.7 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT | 0.70 | 44.0 | 4.45e-01 | 95.1% | 63.0% |
| 5032064 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.69 | 38.0 | 4.21e-01 | 93.1% | 67.1% |
| 4499545 | 604.9.1.20 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › TMD_POM152 | 0.69 | 43.0 | 4.40e-01 | 93.1% | 64.0% |
| 5024001 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.69 | 39.0 | 4.03e-01 | 83.3% | 57.0% |
| 5035458 | 632.1.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid | 0.69 | 42.0 | 4.34e-01 | 86.3% | 65.3% |
| 3626530 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 46.0 | 4.74e-01 | 97.1% | 72.6% |
| 3233324 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 41.0 | 4.44e-01 | 92.2% | 71.8% |
| 3611089 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 42.0 | 3.93e-01 | 96.1% | 50.4% |
| 3596071 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.67 | 47.0 | 4.82e-01 | 72.5% | 81.0% |
| 5079638 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.67 | 43.0 | 4.34e-01 | 91.2% | 65.0% |
| 1145703 | 604.5.1.3 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ArAE_1_C | 0.67 | 42.0 | 4.44e-01 | 93.1% | 69.1% |
| 3192128 | 604.12.1.71 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › TMD_POM152 | 0.65 | 42.0 | 4.21e-01 | 92.2% | 63.8% |
| 3916642 | 192.2.1.56 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF9 | 0.64 | 50.0 | 4.46e-01 | 99.0% | 58.0% |
| 3240575 | 4266.2.1.0 ↗ | alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like | 0.64 | 39.0 | 3.63e-01 | 92.2% | 48.8% |
| 3309012 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.63 | 46.0 | 4.42e-01 | 94.1% | 67.0% |
| 3703542 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.63 | 48.0 | 4.32e-01 | 100.0% | 58.6% |
| 4933446 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.63 | 34.0 | 3.45e-01 | 94.1% | 52.0% |
| 3256577 | 633.22.1.1 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › VKOR | 0.62 | 46.0 | 3.92e-01 | 99.0% | 47.9% |
| 5035870 | 632.1.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid | 0.62 | 39.0 | 3.95e-01 | 95.1% | 61.9% |
| 5014330 | 148.1.3.402 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Rad50_zn_hook | 0.62 | 53.0 | 5.16e-01 | 99.0% | 83.6% |
| 3526587 | 109.4.1.839 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT | 0.60 | 43.0 | 2.91e-01 | 73.5% | 39.4% |
| 3316706 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 41.0 | 4.15e-01 | 71.6% | 74.0% |
| 4056158 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.58 | 42.0 | 4.16e-01 | 87.3% | 70.0% |
| 1893629 | 160.1.1.3 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › T3SS_ATPase_C | 0.58 | 36.0 | 4.03e-01 | 93.1% | 79.7% |
| 3335320 | 5054.1.1.1 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan | 0.58 | 45.0 | 4.82e-01 | 95.1% | 93.3% |
| 3829132 | 604.3.1.35 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF6857 | 0.57 | 51.0 | 4.55e-01 | 97.1% | 73.1% |
| 4449533 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.57 | 36.0 | 3.72e-01 | 94.1% | 67.4% |
| 4040950 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.56 | 42.0 | 4.13e-01 | 91.2% | 72.6% |
| 3635376 | 3755.3.1.298 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ING | 0.56 | 49.0 | 4.48e-01 | 96.1% | 84.4% |
| 3196934 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.54 | 49.0 | 4.26e-01 | 100.0% | 71.6% |
| 3856843 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.54 | 49.0 | 3.35e-01 | 99.0% | 86.3% |
| 4011398 | 633.24.1.0 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain | 0.53 | 35.0 | 3.83e-01 | 92.2% | 81.2% |
| 3279432 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.52 | 45.0 | 4.44e-01 | 94.1% | 92.7% |
| 3704762 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.51 | 46.0 | 4.35e-01 | 100.0% | 92.8% |
| 3190257 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.51 | 45.0 | 4.07e-01 | 100.0% | 97.2% |
| 3297600 | 621.1.1.7 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › EMC6 | 0.51 | 37.0 | 3.82e-01 | 80.4% | 80.0% |
| 3604935 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 46.0 | 2.92e-01 | 100.0% | 50.3% |
D2
medium
residues 1-111
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dg7A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 48.0 | 4.04e-01 | 82.9% | 83.9% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.59 | 29.0 | 3.45e-01 | 70.3% | 67.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1174242 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.84 | 46.0 | 6.18e-01 | 74.8% | 100.0% |
| 3188842 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.75 | 45.0 | 4.34e-01 | 89.2% | 53.6% |
| 3597121 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 55.0 | 4.02e-01 | 93.7% | 86.8% |
| 3344802 | 6158.1.1.0 ↗ | alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region | 0.63 | 36.0 | 4.59e-01 | 82.9% | 98.5% |
| 3255069 | 5050.1.1.10 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 | 0.62 | 48.0 | 3.98e-01 | 83.8% | 50.7% |
| 3387001 | 4953.1.1.2 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C | 0.61 | 32.0 | 3.45e-01 | 91.9% | 58.9% |
| 3283312 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.60 | 36.0 | 3.55e-01 | 75.7% | 55.0% |
| 3828112 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.59 | 46.0 | 2.99e-01 | 82.9% | 80.2% |