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IMGVR_UViG_3300009100_000053-3300009100-Ga0075418_1000361914

Arc-Vir

IMGVR_UViG_3300009100_000053-3300009100-Ga0075418_1000361914

Quality

73.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-60
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 45.0 5.09e-01 72.7% 100.0%
1obhA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.65 51.0 3.26e-01 89.1% 36.6%
3sp1A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 47.0 3.04e-01 81.8% 23.2%
3c0wA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.63 47.0 3.83e-01 87.3% 73.3%
1f7uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.62 44.0 2.72e-01 76.4% 13.3%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.62 44.0 4.00e-01 83.6% 56.0%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.62 49.0 4.58e-01 92.7% 82.2%
2fp3A01 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 50.0 3.32e-01 90.9% 84.6%
5xgbA03 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.61 48.0 3.20e-01 90.9% 44.2%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 52.0 4.04e-01 100.0% 94.4%
4b1bA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 51.0 3.03e-01 100.0% 69.1%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.58 40.0 4.05e-01 72.7% 75.9%
2ra9A01 3.10.540.10 Alpha Beta › Roll › duf1285 like fold › duf1285 like domain 0.57 42.0 4.25e-01 85.5% 81.5%
3vtiA07 1.10.357.160 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.57 45.0 3.34e-01 98.2% 33.3%
1erjB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 40.0 2.51e-01 78.2% 23.0%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 40.0 3.87e-01 85.5% 68.3%
2q0lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 3.30e-01 98.2% 79.7%
1xtfA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.55 49.0 2.89e-01 100.0% 44.3%
7vjvA01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.55 39.0 2.73e-01 78.2% 79.7%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 41.0 3.76e-01 83.6% 66.2%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.83e-01 92.7% 95.4%
4pdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 40.0 3.34e-01 80.0% 76.8%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.54 44.0 3.26e-01 96.4% 60.1%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 46.0 2.94e-01 100.0% 49.5%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 41.0 3.90e-01 85.5% 71.6%
4oijA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 3.76e-01 83.6% 66.2%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.21e-01 96.4% 83.3%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.53 41.0 3.72e-01 87.3% 94.9%
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 37.0 3.46e-01 87.3% 56.8%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 40.0 3.94e-01 83.6% 77.0%
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.52 36.0 3.11e-01 81.8% 41.2%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 3.18e-01 98.2% 57.1%
5ttjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 2.96e-01 98.2% 82.4%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.52 38.0 3.66e-01 98.2% 69.7%
3i6dA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 3.14e-01 96.4% 74.5%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 39.0 3.74e-01 87.3% 80.3%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.67e-01 87.3% 70.1%
4tvcA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.51 42.0 2.94e-01 92.7% 46.3%
4a9wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 2.57e-01 90.9% 88.2%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.19e-01 98.2% 70.9%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 42.0 3.81e-01 96.4% 97.5%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.31e-01 100.0% 60.6%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.51 34.0 2.85e-01 72.7% 67.9%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 35.0 2.69e-01 74.5% 59.7%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 37.0 3.48e-01 83.6% 64.4%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.51 43.0 4.25e-01 98.2% 96.6%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 39.0 3.59e-01 90.9% 71.8%
2wyhB06 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.50 34.0 2.25e-01 72.7% 47.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.50 38.0 3.49e-01 90.9% 62.3%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945302 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.72 55.0 3.51e-01 83.6% 25.8%
4669381 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.69 56.0 4.69e-01 100.0% 52.0%
3444842 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.64 42.0 3.30e-01 80.0% 33.6%
3967108 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.63 37.0 4.17e-01 80.0% 77.5%
4650117 502.1.1.1 a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.63 45.0 3.99e-01 83.6% 52.5%
4153553 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.60e-01 96.4% 91.1%
4389484 2005.1.1.7 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.62 43.0 2.72e-01 72.7% 16.8%
4190615 2005.1.1.7 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.62 44.0 2.83e-01 76.4% 15.7%
5009635 3534.1.1.5 beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF1854 0.60 45.0 4.12e-01 81.8% 86.7%
3974812 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 43.0 2.66e-01 76.4% 25.5%
4498918 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.59 47.0 2.91e-01 87.3% 21.9%
4949048 223.1.1.171 a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_3-Cache_2 0.59 49.0 3.80e-01 100.0% 92.1%
3192216 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 39.0 3.78e-01 70.9% 57.8%
4560474 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.59 46.0 2.99e-01 87.3% 27.9%
4029107 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 39.0 2.55e-01 85.5% 14.2%
4928788 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.58 45.0 2.84e-01 87.3% 22.6%
4975637 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.58 44.0 3.88e-01 81.8% 76.2%
3803377 7.1.1.7 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.57 39.0 3.06e-01 72.7% 56.9%
3628862 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 40.0 2.75e-01 78.2% 37.3%
4379607 207.6.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › HemolysinCabind 0.56 45.0 3.26e-01 89.1% 31.2%
4999233 304.21.1.1 a+b two layers › Alpha-beta plaits › Formylmethanofuran:tetrahydromethanopterin formyltransferase › Formylmethanofuran:tetrahydromethanopterin formyltransferase › FTR 0.56 41.0 3.03e-01 85.5% 42.9%
5042618 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.56 41.0 4.04e-01 87.3% 75.4%
4978405 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.51e-01 96.4% 68.7%
3604573 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.55 39.0 2.25e-01 78.2% 16.2%
1558587 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.55 41.0 3.76e-01 83.6% 66.2%
5066751 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.55 46.0 2.88e-01 98.2% 16.5%
4888761 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 40.0 2.80e-01 80.0% 23.2%
4998989 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.54 45.0 2.97e-01 98.2% 19.6%
5037668 2003.1.2.38 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lycopene_cycl 0.54 45.0 2.81e-01 98.2% 69.9%
3514959 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.54 45.0 3.22e-01 100.0% 79.0%
4952379 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.54 45.0 2.98e-01 100.0% 82.3%
4996887 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.54 45.0 2.96e-01 98.2% 20.0%
4950628 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.54 45.0 2.93e-01 98.2% 20.7%
2728 101.1.2.85 alpha arrays › HTH › HTH › winged helix domain › TraI_2_C 0.54 42.0 3.34e-01 87.3% 86.0%
3437437 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.53 41.0 3.25e-01 81.8% 48.6%
4019781 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 38.0 2.55e-01 80.0% 31.2%
3981713 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.53 43.0 2.79e-01 92.7% 93.2%
4960065 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.53 44.0 2.91e-01 98.2% 20.8%
4310354 2003.1.2.10 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GIDA 0.53 44.0 2.80e-01 98.2% 66.7%
4018275 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.52 43.0 2.71e-01 98.2% 92.1%
4208229 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.52 41.0 4.23e-01 90.9% 98.0%
4014861 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 36.0 2.45e-01 87.3% 17.1%
3894506 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.52 40.0 3.78e-01 85.5% 71.4%
3711594 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 39.0 2.96e-01 81.8% 62.1%
3422047 2003.1.2.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.52 42.0 2.77e-01 98.2% 60.0%
4973029 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 36.0 4.02e-01 72.7% 97.5%
None 0.52 42.0 2.59e-01 98.2% 70.9%
5034127 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 42.0 2.59e-01 98.2% 67.4%
4626642 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 3.74e-01 92.7% 92.5%
3537919 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.52 39.0 3.42e-01 85.5% 85.6%
None 0.51 41.0 2.73e-01 98.2% 60.0%
3392529 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.51 37.0 3.23e-01 80.0% 84.4%
4037872 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.51 41.0 2.74e-01 92.7% 83.1%
5016260 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.51 39.0 3.85e-01 94.5% 81.4%
3382511 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 42.0 2.59e-01 98.2% 70.7%
3626286 223.1.1.29 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.51 38.0 2.98e-01 87.3% 97.9%
4014991 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 42.0 2.49e-01 94.5% 90.7%
5014724 295.1.1.51 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.51 38.0 3.23e-01 85.5% 50.0%
3243256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 41.0 2.93e-01 92.7% 69.7%
3281503 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.50 41.0 2.55e-01 98.2% 71.9%
3192826 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.50 38.0 2.57e-01 89.1% 53.1%
4930437 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.50 37.0 3.12e-01 83.6% 86.7%
3889205 2004.1.1.118 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.50 33.0 2.35e-01 70.9% 19.2%