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IMGVR_UViG_3300009285_003791-3300009285-Ga0103680_100459984

Arc-Vir

IMGVR_UViG_3300009285_003791-3300009285-Ga0103680_100459984

Quality

83.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-130
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.78 61.0 5.81e-01 100.0% 72.2%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.76 61.0 6.26e-01 100.0% 93.0%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.76 65.0 6.55e-01 100.0% 96.0%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.71 60.0 3.72e-01 100.0% 16.8%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.70 63.0 5.96e-01 100.0% 91.0%
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.68 60.0 5.72e-01 100.0% 91.2%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.68 59.0 5.62e-01 100.0% 91.3%
4wqmA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 58.0 5.39e-01 100.0% 89.8%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 57.0 5.60e-01 100.0% 100.0%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 57.0 5.42e-01 100.0% 94.5%
2v3mA00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.64 56.0 5.31e-01 100.0% 80.9%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 55.0 5.52e-01 100.0% 98.7%
4v15A01 2.40.37.20 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain 0.63 50.0 4.17e-01 100.0% 47.9%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.05e-01 71.1% 62.4%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 52.0 5.08e-01 100.0% 95.3%
2e8yA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 4.13e-01 98.7% 65.3%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 49.0 4.54e-01 100.0% 89.6%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.38e-01 72.4% 88.9%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.59e-01 76.3% 96.8%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 4.34e-01 73.7% 98.4%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.57 49.0 4.13e-01 100.0% 57.2%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.57 43.0 2.71e-01 100.0% 12.9%
1kkeA02 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.56 47.0 3.92e-01 97.4% 88.7%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 45.0 4.29e-01 98.7% 77.1%
3rfzA02 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.55 45.0 3.98e-01 96.1% 88.3%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 4.26e-01 97.4% 92.1%
2j2jA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.54 46.0 3.61e-01 100.0% 75.3%
4j3vA01 2.60.40.1130 Mainly Beta › Sandwich › Immunoglobulin-like › Rab geranylgeranyltransferase alpha-subunit, insert domain 0.54 45.0 4.11e-01 98.7% 84.5%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 3.73e-01 94.7% 64.4%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.53 44.0 3.60e-01 100.0% 59.9%
3tp4B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 4.13e-01 100.0% 78.5%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.53 45.0 3.83e-01 100.0% 69.7%
2b5iB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 4.06e-01 100.0% 75.5%
5f7uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.94e-01 100.0% 85.6%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4217174 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.84 68.0 7.09e-01 100.0% 92.9%
5079674 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.83 71.0 7.20e-01 100.0% 93.3%
5078307 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.82 74.0 7.50e-01 100.0% 98.7%
1954233 11.21.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.80 75.0 7.04e-01 100.0% 94.4%
3642150 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.80 67.0 6.18e-01 100.0% 72.6%
4066146 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.79 65.0 5.83e-01 100.0% 64.8%
1714452 11.21.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.79 72.0 6.92e-01 100.0% 94.3%
4194551 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.79 64.0 6.48e-01 100.0% 89.3%
3973332 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.79 64.0 6.47e-01 100.0% 89.3%
3712506 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.78 70.0 6.73e-01 100.0% 85.9%
3964292 1.1.13.38 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_BR0599 0.78 67.0 5.88e-01 100.0% 64.5%
4162532 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.78 64.0 6.47e-01 100.0% 90.7%
4125814 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.78 63.0 6.34e-01 100.0% 89.3%
4403870 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.77 63.0 5.90e-01 100.0% 71.6%
4890345 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.77 64.0 6.24e-01 100.0% 82.4%
3904189 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.76 64.0 5.84e-01 100.0% 70.0%
5081809 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 58.0 6.22e-01 96.1% 95.4%
4080130 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.76 64.0 6.45e-01 100.0% 93.3%
4011239 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 64.0 6.30e-01 100.0% 87.5%
3597282 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.76 67.0 6.62e-01 100.0% 91.3%
4026674 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.76 66.0 6.56e-01 100.0% 90.0%
2556060 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.76 65.0 6.45e-01 100.0% 92.3%
4402716 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.75 63.0 6.08e-01 100.0% 82.4%
4350337 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.75 63.0 6.37e-01 100.0% 93.3%
3512272 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 65.0 6.55e-01 100.0% 94.7%
4166012 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.75 62.0 6.28e-01 100.0% 93.3%
3967745 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.75 62.0 6.32e-01 100.0% 93.3%
1790393 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 62.0 6.12e-01 100.0% 85.4%
3198544 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 68.0 5.86e-01 100.0% 91.3%
5076995 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 60.0 5.97e-01 100.0% 86.3%
4981269 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 66.0 6.14e-01 100.0% 93.7%
5037173 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 66.0 6.11e-01 100.0% 88.4%
5007084 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.74 65.0 5.88e-01 100.0% 95.2%
4083044 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 61.0 6.20e-01 100.0% 93.3%
4939356 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.73 65.0 5.76e-01 100.0% 93.6%
5003338 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 65.0 5.84e-01 100.0% 98.1%
2161972 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 63.0 6.14e-01 100.0% 88.0%
4072878 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 62.0 6.18e-01 100.0% 91.3%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 60.0 5.34e-01 100.0% 64.5%
4883586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 63.0 6.10e-01 100.0% 87.2%
4660673 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 63.0 6.09e-01 100.0% 88.2%
4980136 1.1.7.8 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.70 63.0 5.96e-01 100.0% 94.4%
5022659 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 54.0 5.46e-01 85.5% 92.0%
4303291 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.67 58.0 5.36e-01 100.0% 88.0%
3452625 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.66 59.0 5.40e-01 100.0% 86.0%
5010302 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 57.0 5.55e-01 100.0% 95.3%
5035362 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 58.0 5.49e-01 100.0% 90.0%
4946423 1.1.7.138 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NAD_binding_1 0.65 56.0 5.23e-01 100.0% 90.0%
4954736 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 55.0 5.40e-01 97.4% 95.3%
3976133 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 56.0 5.30e-01 100.0% 88.4%
4938522 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 56.0 5.35e-01 100.0% 87.8%
4064427 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 55.0 5.24e-01 100.0% 95.6%
3778257 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.64 43.0 3.51e-01 71.1% 37.9%
4205165 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 56.0 5.40e-01 100.0% 94.1%
3258767 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.63 43.0 3.40e-01 71.1% 35.3%
4261791 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.63 42.0 3.43e-01 71.1% 36.6%
1449 11.1.1.12 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.61 46.0 4.29e-01 94.7% 63.1%
4395520 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 53.0 4.98e-01 100.0% 82.1%
3261366 11.1.1.802 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.60 50.0 4.69e-01 100.0% 75.8%
4237435 11.1.1.396 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Anth_Ig 0.60 51.0 4.44e-01 97.4% 65.0%
3252482 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.58 49.0 4.62e-01 96.1% 85.3%
5036498 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.58 41.0 4.17e-01 73.7% 74.7%
3563152 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.56 49.0 4.44e-01 100.0% 81.0%
184925 11.21.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › Tailspike_C 0.56 43.0 4.42e-01 100.0% 91.8%
4632674 223.1.1.171 a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_3-Cache_2 0.55 38.0 3.35e-01 71.1% 68.7%
4022673 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 4.15e-01 100.0% 73.7%
3586645 11.1.1.12 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.54 41.0 3.85e-01 94.7% 65.0%
3955906 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 40.0 3.91e-01 82.9% 95.3%
1933304 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.87e-01 97.4% 72.7%
3737235 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 36.0 3.76e-01 81.6% 84.6%
3508343 11.1.1.12 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.52 39.0 3.70e-01 94.7% 65.0%
5058819 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 4.11e-01 100.0% 84.0%
4021603 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 44.0 3.79e-01 100.0% 97.7%
5058817 11.1.1.246 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.51 43.0 4.05e-01 100.0% 84.0%
3845727 11.1.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.51 42.0 3.77e-01 96.1% 77.4%
3551607 11.1.1.283 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL2RB_N1 0.50 43.0 3.95e-01 100.0% 73.3%
D2 high residues 150-200
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17236.9 best SU10_MCP 42.1 1.00e-10 100.0% 17.2%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o5wC03 6.10.250.130 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 41.0 4.24e-01 70.6% 63.3%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5050773 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 52.0 3.72e-01 100.0% 36.1%
4122752 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.52 43.0 3.07e-01 90.2% 49.0%