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IMGVR_UViG_3300009360_000161-3300009360-Ga0118672_10013963

Arc-Vir

IMGVR_UViG_3300009360_000161-3300009360-Ga0118672_10013963

Quality

81.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-90
PDB
D2 medium residues 107-183_644-668
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b8oA01 3.30.1890.10 Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like 0.52 37.0 2.93e-01 75.5% 90.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3998714 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.54 39.0 2.88e-01 77.5% 59.0%
D3 medium residues 556-643
PDB
Domain cluster: representative
CATH (77)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rklA00 6.10.140.1640 Special › Helix non-globular › Helix Hairpins › 0.78 50.0 5.29e-01 81.8% 72.5%
1bdp002 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.77 62.0 5.71e-01 85.2% 88.1%
6vddA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.74 60.0 5.41e-01 85.2% 89.6%
2nnwA02 1.10.287.4070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 59.0 5.27e-01 87.5% 92.1%
2etnB01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.74 51.0 5.49e-01 81.8% 82.9%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.72 54.0 4.70e-01 85.2% 53.1%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.72 47.0 5.12e-01 86.4% 81.7%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 54.0 5.67e-01 85.2% 85.2%
1r0dA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.72 59.0 4.61e-01 90.9% 76.2%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.71 49.0 5.57e-01 84.1% 100.0%
6vq6G02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.71 57.0 4.45e-01 86.4% 91.8%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.71 52.0 5.25e-01 84.1% 75.6%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 48.0 4.69e-01 83.0% 63.9%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 50.0 5.44e-01 84.1% 90.3%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.70 47.0 4.32e-01 78.4% 54.0%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.70 49.0 5.58e-01 88.6% 98.5%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.70 57.0 6.05e-01 92.0% 98.7%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.70 62.0 5.67e-01 94.3% 78.2%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.69 48.0 5.31e-01 81.8% 92.6%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.69 58.0 5.59e-01 93.2% 89.0%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 54.0 5.77e-01 88.6% 96.1%
4lwsB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 49.0 4.91e-01 87.5% 75.0%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 53.0 5.65e-01 83.0% 93.5%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.67 51.0 4.66e-01 84.1% 61.4%
4aybA07 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.67 53.0 4.79e-01 95.5% 61.7%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 55.0 5.07e-01 86.4% 78.0%
1kf6A03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.67 42.0 3.76e-01 86.4% 45.8%
2fcwA00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.67 56.0 5.21e-01 88.6% 92.5%
3evyA00 1.20.58.910 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 43.0 4.45e-01 78.4% 69.9%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.66 51.0 4.40e-01 84.1% 53.3%
1rfyB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.66 47.0 4.73e-01 84.1% 75.0%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.66 53.0 5.35e-01 85.2% 84.4%
1evsA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.66 52.0 4.25e-01 85.2% 76.7%
1fs0G02 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.65 54.0 5.45e-01 87.5% 97.8%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.65 55.0 5.14e-01 89.8% 99.1%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.65 58.0 4.23e-01 96.6% 82.3%
3ce9A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.65 43.0 3.31e-01 85.2% 30.4%
2xgjA04 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.65 49.0 4.28e-01 79.5% 56.1%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.65 52.0 4.68e-01 85.2% 63.9%
2xokP00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.65 49.0 5.24e-01 84.1% 94.6%
3cazB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.65 56.0 4.16e-01 93.2% 77.6%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.65 55.0 5.04e-01 90.9% 96.4%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.65 55.0 4.92e-01 90.9% 70.3%
4fwvA02 1.20.120.1680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.64 59.0 5.07e-01 100.0% 73.1%
3ajwA00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 52.0 4.50e-01 86.4% 80.6%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.64 52.0 5.49e-01 87.5% 98.8%
4fxxB01 6.10.140.1790 Special › Helix non-globular › Helix Hairpins › 0.64 42.0 4.64e-01 83.0% 83.3%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.63 47.0 4.38e-01 85.2% 62.7%
3o39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 53.0 5.16e-01 89.8% 83.3%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 51.0 4.91e-01 87.5% 78.0%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 48.0 4.67e-01 84.1% 72.7%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.63 53.0 4.05e-01 94.3% 40.8%
1y1uA01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.63 51.0 3.88e-01 86.4% 40.5%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.63 52.0 5.39e-01 94.3% 97.5%
3itfA00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 53.0 4.94e-01 95.5% 73.9%
3g67A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.62 51.0 3.79e-01 87.5% 36.2%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.62 49.0 5.13e-01 86.4% 95.1%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 49.0 4.61e-01 85.2% 70.1%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 46.0 4.35e-01 84.1% 67.3%
5fj8A06 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.61 49.0 4.12e-01 93.2% 51.7%
1m6nA04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.61 45.0 3.94e-01 86.4% 51.9%
3fggA00 1.10.3950.10 Mainly Alpha › Orthogonal Bundle › putative ecf-type sigma factor negative effector from bacillus cereus › putative ecf-type sigma factor negative effector from bacillus cereus 0.61 44.0 3.75e-01 77.3% 46.3%
3t98B00 6.10.140.1350 Special › Helix non-globular › Helix Hairpins › 0.60 48.0 4.91e-01 86.4% 93.0%
4xvxA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.60 45.0 3.89e-01 81.8% 93.9%
4flaC00 6.10.250.2560 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 47.0 4.14e-01 87.5% 58.3%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.59 50.0 4.81e-01 93.2% 97.1%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.59 48.0 3.99e-01 89.8% 60.9%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.59 38.0 4.35e-01 76.1% 98.3%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.59 48.0 4.90e-01 92.0% 90.8%
8a1gC01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.59 52.0 4.10e-01 97.7% 69.1%
1hciA04 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 47.0 4.30e-01 86.4% 66.7%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.58 41.0 4.39e-01 78.4% 89.0%
6h9xA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.58 48.0 4.64e-01 93.2% 98.0%
2vs0A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.57 43.0 4.49e-01 85.2% 87.8%
3cqcA00 1.20.190.50 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 0.57 46.0 3.29e-01 86.4% 34.4%
3q9oA02 3.90.1350.10 Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain 0.56 39.0 3.18e-01 71.6% 88.6%
2pbxA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 38.0 2.98e-01 71.6% 72.1%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4819006 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.75 47.0 3.25e-01 86.4% 20.1%
4297833 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.71 53.0 5.31e-01 83.0% 75.6%
3611632 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.71 60.0 5.69e-01 87.5% 81.0%
3655688 3755.3.1.303 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th 0.71 59.0 4.59e-01 87.5% 93.1%
4286197 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.71 51.0 5.38e-01 84.1% 83.7%
3284155 101.1.2.738 alpha arrays › HTH › HTH › winged helix domain › Vir_act_alpha_C 0.70 57.0 4.71e-01 85.2% 50.0%
3875862 192.7.1.83 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › KIF9 0.70 56.0 4.90e-01 84.1% 61.6%
4964814 2007.1.3.72 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › HalX 0.69 50.0 3.93e-01 81.8% 37.7%
3271168 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.68 56.0 4.11e-01 86.4% 49.3%
3403227 192.8.1.465 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CHD5 0.68 60.0 5.58e-01 94.3% 85.5%
3722478 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.68 57.0 4.01e-01 87.5% 32.9%
3915946 5057.1.1.1 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.68 50.0 4.73e-01 77.3% 73.3%
4681339 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.68 55.0 4.32e-01 85.2% 89.4%
3904307 3755.4.1.70 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › KIF9 0.68 59.0 5.05e-01 93.2% 97.0%
3207317 192.7.1.23 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › zf-C4pol 0.68 50.0 4.78e-01 84.1% 68.0%
5023516 3922.1.1.269 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook 0.67 54.0 3.87e-01 84.1% 33.2%
3810801 632.22.1.139 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › KIF21A_4th 0.67 55.0 4.48e-01 85.2% 65.3%
3258119 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.67 56.0 4.07e-01 88.6% 37.3%
5052608 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.67 54.0 4.13e-01 84.1% 94.1%
3284317 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.67 52.0 4.89e-01 80.7% 89.4%
3649572 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.67 62.0 4.19e-01 98.9% 40.0%
4001186 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.67 56.0 4.23e-01 87.5% 42.6%
4203309 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 51.0 3.17e-01 79.5% 16.3%
3244499 109.4.1.2361 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LIN9_C 0.66 54.0 5.36e-01 85.2% 85.6%
3273065 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.66 53.0 3.42e-01 85.2% 21.3%
3239087 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.66 56.0 5.07e-01 89.8% 83.5%
4977416 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 53.0 3.82e-01 85.2% 32.6%
4451459 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.66 46.0 4.07e-01 86.4% 50.4%
3656716 3755.3.1.498 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF31016 0.66 53.0 4.43e-01 85.2% 84.8%
5042955 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.66 54.0 3.19e-01 86.4% 13.8%
3785314 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 52.0 3.71e-01 84.1% 45.7%
3358852 3755.4.1.62 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PF31016 0.65 54.0 4.37e-01 86.4% 80.0%
3336964 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.65 54.0 3.77e-01 87.5% 46.7%
4244210 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.65 54.0 4.13e-01 87.5% 85.9%
3925257 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.64 52.0 4.02e-01 85.2% 48.3%
3757451 3755.3.1.297 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 0.64 58.0 4.74e-01 100.0% 90.6%
3613349 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.63 49.0 4.02e-01 84.1% 45.5%
3933048 4992.1.1.12 extended segments › RelB-like › RelB-like › RelB-like › LIN9_C 0.63 51.0 4.92e-01 86.4% 84.0%
3840952 601.19.1.39 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C 0.63 49.0 5.29e-01 83.0% 98.7%
3554294 603.2.1.1 alpha bundles › STAT-like › STAT › STAT › STAT_alpha 0.63 51.0 3.86e-01 86.4% 39.5%
3318812 192.8.1.248 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › KIF21A_4th 0.62 49.0 4.13e-01 87.5% 50.0%
3183024 3755.3.1.46 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › She9_MDM33 0.62 50.0 4.23e-01 85.2% 58.6%
3337008 192.2.1.60 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF21A_4th 0.62 49.0 4.21e-01 87.5% 53.6%
3441963 605.1.1.222 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF4220 0.62 50.0 4.55e-01 86.4% 87.0%
3606757 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.62 52.0 4.50e-01 93.2% 60.7%
3726914 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.62 52.0 4.43e-01 93.2% 91.7%
4029192 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.62 52.0 3.34e-01 89.8% 75.5%
3477418 4992.1.1.12 extended segments › RelB-like › RelB-like › RelB-like › LIN9_C 0.61 49.0 4.80e-01 85.2% 81.1%
1879027 244.1.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.61 50.0 3.23e-01 87.5% 20.5%
3988260 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.61 49.0 3.30e-01 86.4% 46.2%
3915878 3922.1.1.65 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PLC-beta_C 0.61 54.0 4.02e-01 96.6% 87.2%
3923871 192.2.1.48 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PF26022 0.61 50.0 4.06e-01 90.9% 90.0%
4315986 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.60 50.0 5.04e-01 89.8% 95.6%
4950238 192.5.1.39 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › DUF4405 0.59 45.0 4.58e-01 84.1% 83.5%
3965811 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.59 51.0 4.76e-01 95.5% 83.5%
3739779 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.59 50.0 3.85e-01 90.9% 93.5%
3386010 2004.1.1.430 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.58 48.0 2.95e-01 90.9% 41.4%
5069252 109.4.1.922 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_9 0.58 46.0 3.27e-01 88.6% 28.6%
3597297 3157.1.1.0 alpha arrays › Kinetoplastid membrane protein 11 › Kinetoplastid membrane protein 11 › Kinetoplastid membrane protein 11 0.57 46.0 4.80e-01 92.0% 97.5%
3097991 3758.2.1.1 alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.56 45.0 3.37e-01 88.6% 65.7%
4627741 604.30.1.3 alpha bundles › Spectrin repeat-like › Gamma-secretase subunit PEN-2 › Gamma-secretase subunit PEN-2 › PF29950 0.56 41.0 3.77e-01 87.5% 59.6%
3733682 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.55 47.0 3.41e-01 95.5% 36.1%
D4 medium residues 686-697_746-820
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xqkA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.65 59.0 4.98e-01 100.0% 83.3%
2yk4A01 3.30.370.20 Alpha Beta › 2-Layer Sandwich › Barnase; Chain D › 0.65 44.0 4.52e-01 77.0% 74.4%
4pioA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 47.0 3.68e-01 79.3% 50.8%
2ynmC02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.61 54.0 4.65e-01 98.9% 74.1%
1omzB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.61 46.0 3.32e-01 80.5% 67.1%
5ddtA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.61 46.0 3.41e-01 80.5% 75.4%
3i2vA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.60 45.0 4.10e-01 82.8% 88.7%
3ooyA01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.59 50.0 3.57e-01 97.7% 78.1%
7kx9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 50.0 4.34e-01 98.9% 68.1%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 42.0 3.11e-01 79.3% 27.0%
5braA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 45.0 3.92e-01 85.1% 78.7%
6jtdA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 47.0 3.32e-01 88.5% 32.7%
6khnA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.57 49.0 3.54e-01 97.7% 47.4%
2qmqA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 49.0 3.50e-01 97.7% 82.4%
1ofuX00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 42.0 3.85e-01 79.3% 66.1%
6eudA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 47.0 3.79e-01 90.8% 98.8%
1z5zB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 45.0 3.81e-01 89.7% 98.1%
6yhrA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 40.0 3.12e-01 77.0% 78.6%
3ewlB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 42.0 3.73e-01 85.1% 75.2%
3v4cA02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.55 43.0 3.39e-01 85.1% 72.8%
3ny7A00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.55 40.0 3.75e-01 80.5% 91.5%
4dgfA00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.54 41.0 3.76e-01 82.8% 89.3%
5supC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 39.0 3.06e-01 79.3% 60.1%
3i5xA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 44.0 3.21e-01 94.3% 70.8%
7xc2A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 3.65e-01 96.6% 100.0%
1u7nA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 43.0 3.03e-01 95.4% 44.5%
2b8tA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 3.93e-01 100.0% 64.7%
7clgB03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 3.43e-01 100.0% 83.4%
1w4rA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 3.37e-01 81.6% 87.1%
3g5jA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.50 43.0 3.87e-01 100.0% 83.1%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940782 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.72 67.0 6.06e-01 100.0% 93.0%
4943645 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.71 61.0 5.48e-01 94.3% 95.8%
5040125 2003.1.5.71 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_33 0.67 46.0 3.05e-01 74.7% 18.5%
3285778 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.66 48.0 3.27e-01 77.0% 51.7%
3993947 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.65 41.0 4.11e-01 86.2% 61.1%
3573735 7590.1.1.0 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.63 54.0 4.97e-01 96.6% 91.3%
3591357 2003.1.1.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Slo-like_RCK 0.62 46.0 3.54e-01 77.0% 41.5%
3781469 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.60 48.0 3.71e-01 87.4% 79.5%
3242009 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.59 50.0 3.66e-01 93.1% 97.4%
3703373 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 49.0 3.65e-01 92.0% 75.6%
3380306 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.59 45.0 3.34e-01 82.8% 96.6%
3472978 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 48.0 3.58e-01 90.8% 97.3%
3709810 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.58 46.0 3.50e-01 87.4% 80.0%
4028925 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.57 42.0 3.26e-01 78.2% 61.0%
4651951 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 48.0 3.41e-01 94.3% 80.0%
3388291 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 47.0 4.14e-01 89.7% 75.2%
4474426 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 45.0 3.65e-01 90.8% 96.1%
5009873 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.55 43.0 3.48e-01 86.2% 44.4%
3300825 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.55 45.0 3.32e-01 90.8% 90.8%
3241059 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 44.0 3.21e-01 87.4% 69.2%
1518906 2485.1.1.45 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_8 0.55 43.0 3.79e-01 87.4% 73.2%
3833743 2004.1.1.364 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C 0.55 47.0 2.98e-01 100.0% 71.3%
4064292 2004.1.1.494 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N, PF27467 0.55 46.0 2.73e-01 96.6% 47.7%
3715626 2004.1.1.240 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Utp25_C 0.54 43.0 3.36e-01 88.5% 84.5%
None 0.54 42.0 3.15e-01 88.5% 66.0%
3242404 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.53 41.0 3.31e-01 87.4% 80.0%
4029190 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.53 42.0 2.99e-01 88.5% 74.9%
4024538 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.53 39.0 3.14e-01 80.5% 67.4%
3708785 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.53 45.0 3.08e-01 100.0% 75.1%
3494659 2004.1.1.697 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C, AAA_22 0.53 44.0 2.83e-01 93.1% 87.4%
3811864 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.52 37.0 2.86e-01 73.6% 55.0%
3541569 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 42.0 2.98e-01 93.1% 84.7%
3274725 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.51 40.0 3.09e-01 89.7% 71.1%
3928290 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.51 42.0 3.21e-01 93.1% 73.8%
4954459 4156.1.1.7 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DUF5814 0.51 41.0 2.74e-01 88.5% 39.7%
3572339 375.1.1.54 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Thr_synth_N 0.51 39.0 2.90e-01 82.8% 72.9%
4961851 2004.1.1.196 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.51 43.0 3.48e-01 95.4% 98.3%
3363794 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.51 32.0 3.10e-01 73.6% 54.5%
4944399 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.50 43.0 3.34e-01 98.9% 94.8%