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IMGVR_UViG_3300009369_002017-3300009369-Ga0118714_10622971

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300009369_002017-3300009369-Ga0118714_10622971 ↗
Kingdom:: archaea

Quality

74.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 14-84

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1e7lA02	1.10.720.10	Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 ›	0.81	53.0	5.93e-01	80.3%	87.3%
1y02A01	1.10.720.140	Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 ›	0.79	47.0	4.55e-01	74.6%	53.8%
1zbuB01	1.10.720.30	Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain	0.70	52.0	5.15e-01	88.7%	75.7%
3ezqA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.67	53.0	4.59e-01	88.7%	62.6%
4c0kA02	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.62	48.0	3.63e-01	88.7%	46.0%
2lhiA00	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.56	44.0	3.47e-01	93.0%	54.0%
2riqA01	1.10.20.130	Mainly Alpha › Orthogonal Bundle › Histone, subunit A ›	0.55	40.0	4.17e-01	78.9%	83.3%
2rjiA00	1.10.1740.170	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Erythrocyte binding antigen 175 region VI	0.55	40.0	3.82e-01	85.9%	66.7%
3hd6A00	1.10.3430.10	Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains	0.53	42.0	2.73e-01	93.0%	63.0%
2da3A01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.53	29.0	3.33e-01	70.4%	76.6%
3cskA02	3.30.540.30	Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 ›	0.52	36.0	2.88e-01	73.2%	65.4%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4121822	130.1.1.1 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP	0.88	56.0	6.62e-01	80.3%	92.0%
3989397	3949.1.1.0 ↗	alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	0.85	55.0	6.14e-01	80.3%	85.5%
3769015	130.1.1.2 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM	0.79	53.0	6.23e-01	80.3%	98.0%
3699757	632.18.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901	0.70	52.0	5.32e-01	80.3%	88.6%
3701400	529.1.1.0 ↗	few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system)	0.69	51.0	5.19e-01	78.9%	87.1%
3737965	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.59	45.0	4.10e-01	85.9%	99.0%
3627298	108.1.1.30 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8	0.57	46.0	3.66e-01	98.6%	87.4%
4270580	304.9.1.1 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1	0.56	42.0	2.83e-01	83.1%	53.9%
4182872	193.3.1.1 ↗	alpha bundles › CH domain-like › Surface-layer homology (SLH) domains › Surface-layer homology (SLH) domains › SLH	0.53	39.0	2.99e-01	78.9%	96.0%
3931880	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.51	40.0	3.99e-01	88.7%	97.3%
3970855	2002.3.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase	0.50	43.0	2.89e-01	100.0%	24.1%

D2 medium residues 92-126

PDB