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IMGVR_UViG_3300009426_000899-3300009426-Ga0115547_10086101

Arc-Vir

IMGVR_UViG_3300009426_000899-3300009426-Ga0115547_10086101

Identity

Kingdom:
archaea

Quality

91.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-38
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23966.2 best DUF7294 44.6 1.60e-11 100.0% 60.6%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4uijA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.67 52.0 3.80e-01 86.5% 64.4%
1u7kA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.66 53.0 3.64e-01 91.9% 30.5%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.66 47.0 3.68e-01 81.1% 86.8%
1pmtA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 43.0 3.24e-01 86.5% 25.5%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 47.0 4.03e-01 100.0% 48.5%
3chxA02 1.10.287.710 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 46.0 3.48e-01 83.8% 81.4%
1rsgA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 49.0 2.97e-01 91.9% 37.6%
2bddA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.59 50.0 3.48e-01 97.3% 32.3%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.22e-01 91.9% 69.3%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.59 50.0 3.45e-01 100.0% 70.6%
2r6fA04 1.10.8.280 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ABC transporter ATPase domain-like 0.59 42.0 2.96e-01 100.0% 23.7%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.58 46.0 3.00e-01 89.2% 99.4%
4yy8B01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.57 45.0 3.60e-01 89.2% 75.6%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.57 44.0 3.65e-01 83.8% 77.3%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.55 45.0 3.24e-01 94.6% 87.3%
1u0tB01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.55 41.0 2.91e-01 89.2% 80.6%
3m62B00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 43.0 3.66e-01 100.0% 93.1%
1h0zA00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.52 36.0 3.12e-01 89.2% 35.3%
2kd0A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 41.0 3.49e-01 100.0% 93.0%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 42.0 3.02e-01 100.0% 40.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3269367 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 53.0 4.14e-01 91.9% 35.8%
3804378 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.66 47.0 3.76e-01 70.3% 53.3%
3921782 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.66 49.0 2.97e-01 94.6% 11.5%
3366088 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.63 51.0 3.04e-01 91.9% 12.2%
4043003 601.7.1.6 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase 0.61 49.0 3.29e-01 91.9% 21.8%
3798928 59.1.4.2 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.60 50.0 2.84e-01 100.0% 9.2%
3937632 859.1.1.0 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.59 46.0 2.99e-01 86.5% 31.4%
3939493 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.58 47.0 2.89e-01 94.6% 14.0%
145205 170.2.1.1 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Gag_p24 0.57 44.0 3.04e-01 91.9% 77.2%
3220832 592.7.1.1 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.55 48.0 3.64e-01 100.0% 41.1%
3789627 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 40.0 3.36e-01 86.5% 47.7%
4294089 190.1.1.7 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › MATalpha_HMGbox 0.51 39.0 2.82e-01 100.0% 46.4%