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IMGVR_UViG_3300009433_000007-3300009433-Ga0115545_100005937
Arc-VirIMGVR_UViG_3300009433_000007-3300009433-Ga0115545_100005937
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-98
Domain cluster:
rep: IMGVR_UViG_3300032006_002050-3300032006-Ga0310344_100038483__D2-86
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16243.11 best | Sm_like | 41.4 | 1.70e-10 | 88.2% | 97.7% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3by7E00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.92 | 72.0 | 7.98e-01 | 93.5% | 100.0% |
| 4m7dA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.84 | 51.0 | 6.06e-01 | 80.6% | 87.7% |
| 2vc8A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 51.0 | 5.72e-01 | 81.7% | 81.9% |
| 1m5q101 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 49.0 | 5.67e-01 | 82.8% | 83.8% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 51.0 | 5.93e-01 | 81.7% | 88.2% |
| 4m78N00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 47.0 | 5.34e-01 | 81.7% | 77.5% |
| 1b34B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 48.0 | 5.29e-01 | 83.9% | 77.0% |
| 5mkiH00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 47.0 | 5.29e-01 | 79.6% | 78.9% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 49.0 | 5.52e-01 | 81.7% | 82.2% |
| 4c92G00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 50.0 | 5.47e-01 | 83.9% | 84.0% |
| 4c92B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 49.0 | 4.76e-01 | 82.8% | 60.0% |
| 4emhA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 47.0 | 5.70e-01 | 79.6% | 98.3% |
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 47.0 | 5.36e-01 | 81.7% | 84.5% |
| 3jb9F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 47.0 | 5.05e-01 | 82.8% | 74.4% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 44.0 | 5.39e-01 | 83.9% | 96.6% |
| 3pggA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 48.0 | 5.20e-01 | 81.7% | 82.1% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.67 | 45.0 | 4.83e-01 | 91.4% | 81.8% |
| 4c92C00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 46.0 | 4.97e-01 | 80.6% | 83.5% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.67 | 45.0 | 4.57e-01 | 86.0% | 69.9% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 36.0 | 4.47e-01 | 78.5% | 90.6% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 47.0 | 5.03e-01 | 91.4% | 90.1% |
| 5hk0B00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 53.0 | 5.07e-01 | 100.0% | 96.3% |
| 4jglA00 | 2.40.128.530 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 47.0 | 4.04e-01 | 91.4% | 98.7% |
| 3cp3A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 38.0 | 3.45e-01 | 76.3% | 82.7% |
| 2jobA00 | 3.30.160.320 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 37.0 | 3.64e-01 | 100.0% | 69.6% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4813032 | 4.1.1.328 ↗ | beta barrels › SH3 › SH3 › SH3 › Sm_like | 0.91 | 74.0 | 7.95e-01 | 96.8% | 98.7% |
| 1120986 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.84 | 51.0 | 5.93e-01 | 80.6% | 85.1% |
| 3167351 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.76 | 49.0 | 5.09e-01 | 83.9% | 69.3% |
| 3483309 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 53.0 | 4.81e-01 | 86.0% | 54.4% |
| 3999729 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.74 | 49.0 | 5.08e-01 | 82.8% | 70.8% |
| 3701868 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.73 | 51.0 | 5.17e-01 | 84.9% | 73.3% |
| 3922676 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.73 | 56.0 | 5.50e-01 | 82.8% | 75.0% |
| 3704663 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.73 | 49.0 | 5.39e-01 | 82.8% | 85.3% |
| 4030048 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.72 | 55.0 | 5.33e-01 | 89.2% | 71.4% |
| 5048974 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 47.0 | 4.40e-01 | 83.9% | 57.3% |
| 3341533 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.70 | 53.0 | 5.27e-01 | 81.7% | 76.8% |
| 3927391 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.70 | 51.0 | 4.94e-01 | 84.9% | 68.9% |
| 3712189 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.70 | 51.0 | 5.23e-01 | 87.1% | 78.9% |
| 3168781 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.69 | 50.0 | 4.76e-01 | 83.9% | 65.7% |
| 3486357 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 50.0 | 5.41e-01 | 86.0% | 88.7% |
| 3665119 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.69 | 47.0 | 5.07e-01 | 79.6% | 82.5% |
| 5081091 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 54.0 | 5.43e-01 | 84.9% | 87.4% |
| 4013487 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 47.0 | 4.44e-01 | 79.6% | 63.6% |
| 3555586 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.63 | 48.0 | 4.76e-01 | 82.8% | 77.9% |
| 3702167 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 50.0 | 4.69e-01 | 87.1% | 71.3% |
| 3910727 | 4.1.1.353 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 | 0.60 | 35.0 | 4.01e-01 | 80.6% | 81.5% |
| 4017204 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.60 | 49.0 | 4.80e-01 | 87.1% | 85.0% |
| 3385723 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.60 | 40.0 | 4.05e-01 | 72.0% | 68.4% |
| 3250542 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.59 | 44.0 | 4.33e-01 | 80.6% | 76.0% |
| 5012680 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.58 | 52.0 | 4.97e-01 | 100.0% | 97.3% |
| 3509763 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.57 | 45.0 | 3.90e-01 | 86.0% | 67.3% |
| 224086 | 9.18.1.0 ↗ | beta barrels › Lipocalins/Streptavidin | 0.57 | 47.0 | 4.04e-01 | 91.4% | 98.7% |
| 4128405 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.57 | 31.0 | 3.47e-01 | 86.0% | 68.6% |
| 4938225 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.56 | 50.0 | 4.87e-01 | 100.0% | 99.0% |
| 4323235 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.56 | 44.0 | 4.18e-01 | 83.9% | 73.6% |
| 3642679 | 220.1.1.78 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 | 0.55 | 43.0 | 4.07e-01 | 81.7% | 75.0% |
| 5071733 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.54 | 36.0 | 3.67e-01 | 77.4% | 70.0% |
| 3472532 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 41.0 | 3.56e-01 | 81.7% | 81.4% |
| 4186556 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 44.0 | 4.24e-01 | 93.5% | 89.1% |
| 5023445 | 289.1.1.2 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Zn_protease | 0.53 | 40.0 | 3.53e-01 | 81.7% | 72.1% |
| 3422852 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.53 | 47.0 | 4.23e-01 | 97.8% | 91.2% |
| 3412051 | 7026.1.1.0 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 | 0.52 | 36.0 | 2.65e-01 | 73.1% | 43.9% |
| 3258675 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.52 | 47.0 | 4.06e-01 | 100.0% | 65.7% |
| 5077779 | 2003.1.5.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › BpsA_C | 0.51 | 38.0 | 2.81e-01 | 80.6% | 88.8% |
| 4927468 | 881.4.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB | 0.50 | 34.0 | 2.91e-01 | 74.2% | 40.0% |