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IMGVR_UViG_3300009502_000042-3300009502-Ga0114951_1000028412

Arc-Vir

IMGVR_UViG_3300009502_000042-3300009502-Ga0114951_1000028412

Quality

83.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 73-162
PDB
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i0dA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.68 54.0 4.69e-01 100.0% 55.4%
4zxwB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.62 47.0 3.90e-01 83.3% 79.7%
7uzsX01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 50.0 4.47e-01 94.4% 90.1%
2pmwB02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.58 44.0 3.41e-01 100.0% 35.6%
7o0eA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 39.0 4.09e-01 100.0% 77.1%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.77e-01 100.0% 87.6%
1k8iB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.68e-01 97.8% 84.8%
2fsuA00 3.40.50.11310 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Bacterial phosphonate metabolism protein PhnH 0.56 45.0 3.69e-01 88.9% 95.9%
3f7wA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 39.0 3.91e-01 86.7% 72.5%
3nk4A02 2.60.40.4100 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain 0.54 47.0 3.94e-01 97.8% 74.5%
1x8bA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 38.0 3.92e-01 87.8% 78.6%
3vx8A01 3.40.140.100 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain 0.52 38.0 3.43e-01 80.0% 98.6%
1epfA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 4.22e-01 100.0% 88.2%
5h5zA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 4.22e-01 100.0% 94.3%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2475322 4178.1.1.1 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.68 60.0 5.01e-01 97.8% 58.4%
5071906 4178.1.1.1 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.65 56.0 4.71e-01 97.8% 57.2%
4434841 323.1.1.5 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.63 49.0 3.90e-01 85.6% 64.6%
4410129 323.1.1.5 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.61 47.0 3.98e-01 85.6% 75.0%
3254689 11.1.1.793 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7743 0.59 47.0 4.48e-01 100.0% 73.3%
3411013 12.5.1.1 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 0.58 49.0 4.11e-01 91.1% 86.0%
3278644 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.58 45.0 3.64e-01 84.4% 68.9%
3277508 11.1.1.793 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7743 0.56 44.0 4.29e-01 98.9% 78.0%
1680214 7578.1.1.1 a/b three-layered sandwiches › PhnH-like › PhnH-like › PhnH-like › PhnH 0.55 44.0 3.50e-01 88.9% 90.7%
3686467 236.1.1.1 beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N 0.55 38.0 3.15e-01 73.3% 63.4%
3432142 10.32.1.198 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.54 47.0 3.61e-01 98.9% 79.5%
3217107 12.1.1.94 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 0.54 47.0 4.12e-01 100.0% 67.1%
3267673 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 4.04e-01 96.7% 83.5%
4958674 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.53 46.0 4.50e-01 97.8% 91.0%
5045937 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.52 45.0 4.44e-01 98.9% 94.0%
3898365 12.5.1.2 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS 0.52 43.0 3.43e-01 92.2% 74.1%
4173804 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 42.0 4.27e-01 97.8% 94.4%
4959189 2007.1.3.22 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Radical_SAM_N 0.50 38.0 2.74e-01 82.2% 45.3%
D2 medium residues 3-53_230-263
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lcvB01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.71 45.0 5.32e-01 85.9% 94.7%
3vkgA08 1.10.472.130 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain 0.64 56.0 4.61e-01 100.0% 60.6%
3qwlA03 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.57 51.0 4.38e-01 100.0% 88.2%
3vkgA15 1.10.8.1220 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 49.0 4.82e-01 100.0% 90.4%
1fx0A03 1.20.150.20 Mainly Alpha › Up-down Bundle › Lysin › ATP synthase alpha/beta chain, C-terminal domain 0.57 42.0 3.70e-01 84.7% 52.7%
3ay5A01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.56 41.0 3.45e-01 75.3% 48.9%
1pu6A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.56 46.0 4.06e-01 100.0% 61.8%
1x9fD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 44.0 3.80e-01 87.1% 93.6%
1gpjA03 1.10.1200.70 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glutamyl tRNA-reductase dimerization domain 0.55 39.0 3.97e-01 98.8% 74.1%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 42.0 4.42e-01 82.4% 94.6%
3r0qA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.54 42.0 3.12e-01 82.4% 97.1%
2d2sA02 1.20.58.1220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain 0.53 36.0 3.46e-01 70.6% 61.4%
1vi0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 43.0 3.64e-01 89.4% 84.1%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 36.0 3.63e-01 70.6% 71.3%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3504303 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 40.0 3.84e-01 70.6% 76.0%
5030379 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.57 45.0 4.50e-01 84.7% 81.1%
3743047 604.5.1.28 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TBCC_N 0.57 39.0 3.98e-01 70.6% 72.9%
3915047 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 40.0 3.69e-01 71.8% 65.7%
4959130 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.57 35.0 3.83e-01 84.7% 75.7%
3644152 109.4.1.1273 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.57 31.0 2.85e-01 91.8% 42.9%
3824769 109.4.1.1330 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, PPR_long 0.54 30.0 2.23e-01 90.6% 21.6%
3809325 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.53 31.0 2.57e-01 91.8% 33.1%
3463607 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.53 37.0 2.91e-01 100.0% 34.4%
3603032 622.1.1.0 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.53 37.0 3.71e-01 71.8% 78.8%
3802240 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.52 39.0 3.66e-01 77.6% 73.0%
3461715 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.51 39.0 3.70e-01 81.2% 77.0%
4027648 1076.1.1.6 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › DUF2053 0.50 45.0 3.29e-01 100.0% 87.7%
D3 medium residues 171-225
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qwuA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.68 49.0 3.44e-01 78.2% 27.2%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 46.0 3.17e-01 78.2% 36.9%
6imjA01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.65 47.0 3.27e-01 78.2% 26.6%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 45.0 4.00e-01 74.5% 93.7%
2p2eA00 2.60.300.12 Mainly Beta › Sandwich › Hypothetical Protein Aq_1857; Chain: A; › HesB-like domain 0.63 46.0 3.69e-01 80.0% 75.6%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 43.0 2.77e-01 70.9% 94.7%
4mjdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 3.44e-01 80.0% 61.1%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 39.0 2.59e-01 70.9% 23.1%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 42.0 3.49e-01 80.0% 94.9%
3id6A01 3.30.420.220 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 42.0 3.34e-01 78.2% 75.5%
4c3iG02 2.40.50.1060 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 40.0 3.08e-01 80.0% 66.9%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 2.82e-01 80.0% 42.1%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.25e-01 100.0% 84.5%
3f3fD01 2.20.25.500 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 37.0 3.78e-01 72.7% 88.2%
6p0wA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 42.0 3.34e-01 100.0% 80.0%
1gwmA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.52 37.0 2.75e-01 76.4% 84.3%
2aaaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 31.0 2.60e-01 80.0% 32.4%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.46e-01 81.8% 77.0%
1tfkA00 3.10.450.200 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.57e-01 94.5% 92.6%
1xvwA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 42.0 3.21e-01 100.0% 72.2%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3606912 206.1.3.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.76 57.0 3.61e-01 80.0% 19.2%
3605538 206.1.3.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.74 55.0 3.48e-01 80.0% 18.5%
3599023 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.73 55.0 3.56e-01 80.0% 21.3%
3620234 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.68 40.0 2.85e-01 74.5% 20.0%
3665481 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.65 39.0 4.21e-01 74.5% 71.1%
4963965 873.1.1.22 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF25939 0.65 50.0 3.69e-01 87.3% 83.7%
3190898 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.65 39.0 4.48e-01 70.9% 82.5%
3800040 5.1.4.422 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Rol-3 0.64 47.0 3.16e-01 80.0% 94.7%
3264116 5.1.5.76 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N 0.62 43.0 2.64e-01 72.7% 34.3%
4868007 5.1.2.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › NHL 0.62 42.0 2.78e-01 72.7% 34.3%
3790336 5.1.3.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_Rol-3 0.61 44.0 2.98e-01 80.0% 91.1%
3286894 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.60 43.0 3.58e-01 76.4% 60.0%
3703176 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.60 40.0 4.38e-01 72.7% 86.4%
3824752 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.60 45.0 3.37e-01 80.0% 63.8%
3800251 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 48.0 4.33e-01 89.1% 94.7%
5070689 11.1.1.18 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LTD 0.59 40.0 3.16e-01 72.7% 84.6%
3740685 3468.1.1.1 a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.59 51.0 4.11e-01 100.0% 57.3%
5011863 281.1.1.0 a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase 0.58 41.0 3.15e-01 76.4% 42.1%
4937761 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.58 47.0 2.77e-01 96.4% 39.1%
4971822 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 39.0 2.77e-01 70.9% 83.4%
4959054 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 3.53e-01 76.4% 72.9%
3658422 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.56 40.0 3.67e-01 76.4% 98.7%
3528508 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 43.0 3.44e-01 85.5% 90.4%
3784883 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 40.0 2.59e-01 85.5% 82.2%
3303901 3468.1.1.0 a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain 0.54 45.0 3.34e-01 100.0% 40.3%
4285716 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 38.0 3.91e-01 100.0% 88.0%
3791045 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.53 43.0 3.37e-01 98.2% 55.7%
3496197 2002.4.1.0 a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like 0.53 35.0 2.25e-01 87.3% 12.9%
3962103 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.53 38.0 3.06e-01 76.4% 56.2%
4809491 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 40.0 3.71e-01 90.9% 67.9%
4782007 5.1.11.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.53 39.0 2.51e-01 80.0% 26.1%
4194016 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.51 36.0 3.38e-01 72.7% 86.2%