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IMGVR_UViG_3300009502_000203-3300009502-Ga0114951_100020094
Arc-VirIMGVR_UViG_3300009502_000203-3300009502-Ga0114951_100020094
Identity
- Kingdom:
- archaea
Quality
80.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-23_133-272
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00074__D706-861
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18818.8 best | MPTase-PolyVal | 114.1 | 6.30e-33 | 81.2% | 98.4% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wb0X01 | 1.10.269.10 | Mainly Alpha › Orthogonal Bundle › Adenovirus Single-stranded Dna-binding Protein, domain 1 › Adenovirus DNA-binding, N-terminal domain | 0.71 | 46.0 | 5.30e-01 | 87.5% | 88.9% |
| 3ce2A03 | 1.10.1370.20 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › Oligoendopeptidase f, C-terminal domain | 0.63 | 54.0 | 4.14e-01 | 92.5% | 74.5% |
| 3m03B00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 37.0 | 4.57e-01 | 75.0% | 96.8% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.59 | 32.0 | 3.76e-01 | 74.4% | 74.3% |
| 1exaA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.58 | 49.0 | 4.28e-01 | 90.6% | 88.1% |
| 1pwuA04 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.57 | 47.0 | 4.16e-01 | 85.6% | 77.8% |
| 4yozA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 46.0 | 4.49e-01 | 87.5% | 88.9% |
| 2qgmA03 | 1.20.1440.30 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain | 0.56 | 29.0 | 3.30e-01 | 85.6% | 65.5% |
| 7w5gA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 46.0 | 3.63e-01 | 100.0% | 89.5% |
| 8gr7A01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 46.0 | 3.71e-01 | 100.0% | 92.8% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 37.0 | 3.61e-01 | 75.0% | 84.0% |
| 2qibB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 35.0 | 3.25e-01 | 70.0% | 72.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4232269 | 2498.1.1.75 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › MPTase-PolyVal | 0.93 | 64.0 | 6.92e-01 | 87.5% | 80.0% |
| 4031195 | 2498.1.1.50 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Zn_peptidase_2 | 0.82 | 57.0 | 5.81e-01 | 70.6% | 94.2% |
| 3949212 | 2498.1.1.75 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › MPTase-PolyVal | 0.81 | 77.0 | 7.22e-01 | 99.4% | 90.6% |
| 4536357 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.80 | 75.0 | 6.57e-01 | 98.8% | 91.1% |
| 5057933 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.75 | 48.0 | 5.21e-01 | 71.2% | 75.6% |
| 3589965 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.66 | 52.0 | 5.61e-01 | 82.5% | 95.6% |
| 4079914 | 2498.1.1.66 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › CobT | 0.64 | 51.0 | 4.73e-01 | 83.7% | 89.5% |
| 3338197 | 109.4.1.1668 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27696 | 0.57 | 43.0 | 3.20e-01 | 78.8% | 43.3% |
| 4990639 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.54 | 38.0 | 3.15e-01 | 71.2% | 89.6% |
| 4347645 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.52 | 47.0 | 3.76e-01 | 100.0% | 94.2% |
| 4425776 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.52 | 46.0 | 3.75e-01 | 98.8% | 96.8% |
| 4657087 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.51 | 46.0 | 3.71e-01 | 100.0% | 94.2% |
| 4992173 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.51 | 36.0 | 3.52e-01 | 71.9% | 95.6% |
| 3407400 | 616.1.1.1 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 | 0.51 | 41.0 | 3.83e-01 | 91.3% | 69.2% |
| 4354970 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.51 | 46.0 | 3.66e-01 | 100.0% | 92.6% |
D2
high
residues 33-117
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08401.17 best | ArdcN | 75.4 | 6.70e-21 | 92.9% | 69.9% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 38.0 | 3.49e-01 | 87.1% | 43.2% |
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.61 | 32.0 | 3.57e-01 | 80.0% | 62.1% |
| 1p1hB01 | 3.30.2360.10 | Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain | 0.59 | 37.0 | 2.93e-01 | 97.6% | 30.1% |
| 4eo0A00 | 3.30.110.160 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.58 | 35.0 | 3.28e-01 | 84.7% | 49.1% |
| 7r5mA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.58 | 34.0 | 2.56e-01 | 80.0% | 22.4% |
| 3hvnA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.57 | 32.0 | 3.80e-01 | 88.2% | 84.9% |
| 6rupA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 34.0 | 3.17e-01 | 87.1% | 45.9% |
| 1s3rA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.54 | 30.0 | 3.56e-01 | 87.1% | 83.0% |
| 1pfoA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.54 | 29.0 | 3.54e-01 | 85.9% | 81.1% |
| 3oc9A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.54 | 47.0 | 3.09e-01 | 100.0% | 79.3% |
| 1vwxP00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.52 | 41.0 | 3.48e-01 | 90.6% | 98.7% |
| 1f8vC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 41.0 | 2.89e-01 | 90.6% | 85.9% |
| 1vq8R00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.51 | 39.0 | 3.42e-01 | 89.4% | 99.3% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3947849 | 3609.1.1.4 ↗ | alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › ArdcN | 0.89 | 85.0 | 8.38e-01 | 100.0% | 96.6% |
| 3563069 | 1086.1.1.5 ↗ | beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › EMI | 0.73 | 36.0 | 4.78e-01 | 71.8% | 88.9% |
| 4071803 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.66 | 42.0 | 3.25e-01 | 94.1% | 29.5% |
| 4944821 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.66 | 34.0 | 3.95e-01 | 84.7% | 70.0% |
| 4882343 | 2003.1.1.59 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 | 0.65 | 40.0 | 2.73e-01 | 97.6% | 16.1% |
| 3649881 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.64 | 36.0 | 3.68e-01 | 91.8% | 55.3% |
| 3739811 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.63 | 37.0 | 3.68e-01 | 94.1% | 55.7% |
| None | — | 0.62 | 39.0 | 2.52e-01 | 97.6% | 13.5% | |
| 4044404 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.62 | 36.0 | 3.39e-01 | 85.9% | 46.7% |
| 3587268 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 52.0 | 4.61e-01 | 92.9% | 96.7% |
| 3995685 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.61 | 37.0 | 3.42e-01 | 88.2% | 46.8% |
| 3215667 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.60 | 37.0 | 3.32e-01 | 89.4% | 43.3% |
| 3616323 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.59 | 42.0 | 3.17e-01 | 90.6% | 31.8% |
| 4877695 | 304.51.1.3 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc | 0.59 | 42.0 | 3.47e-01 | 74.1% | 75.2% |
| 3839607 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.58 | 36.0 | 3.23e-01 | 88.2% | 43.2% |
| 4372267 | 868.1.1.2 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase | 0.58 | 44.0 | 3.04e-01 | 81.2% | 56.2% |
| 3926817 | 219.1.1.25 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT | 0.57 | 41.0 | 3.29e-01 | 75.3% | 58.6% |
| 3705552 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 37.0 | 2.97e-01 | 87.1% | 33.9% |
| 3495218 | 922.1.1.9 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 | 0.57 | 31.0 | 3.66e-01 | 85.9% | 86.0% |
| 4969760 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.56 | 46.0 | 4.05e-01 | 91.8% | 87.7% |
| 4933294 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.56 | 46.0 | 4.09e-01 | 91.8% | 92.0% |
| 5057420 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.53 | 43.0 | 2.97e-01 | 88.2% | 34.3% |
| 3639274 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.53 | 38.0 | 2.33e-01 | 96.5% | 12.1% |
| 5053699 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.53 | 44.0 | 3.92e-01 | 91.8% | 91.2% |
| 3543052 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.53 | 36.0 | 3.36e-01 | 100.0% | 54.5% |
| 3340060 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.53 | 28.0 | 3.01e-01 | 82.4% | 58.7% |
| 3387999 | 2003.2.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 | 0.53 | 46.0 | 3.41e-01 | 96.5% | 66.4% |
| 3684690 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.52 | 34.0 | 3.37e-01 | 88.2% | 62.2% |
| 3777035 | 11.1.1.504 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Dynactin_p62 | 0.52 | 37.0 | 4.11e-01 | 83.5% | 91.3% |
| 2099165 | 10.2.1.22 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Peptidase_A6 | 0.52 | 42.0 | 2.85e-01 | 91.8% | 74.6% |
| 3852918 | 4290.1.1.8 ↗ | alpha duplicates or obligate multimers › HP0242-like › HP0242-like › HP0242-like › Dynactin_p62 | 0.52 | 37.0 | 4.11e-01 | 82.4% | 91.3% |
| 4997494 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.52 | 43.0 | 3.20e-01 | 100.0% | 35.5% |
| 4973231 | 304.48.1.20 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1 | 0.51 | 40.0 | 2.92e-01 | 84.7% | 87.1% |
| 3942344 | 2485.3.1.19 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 | 0.50 | 40.0 | 2.82e-01 | 89.4% | 83.2% |
| 4552467 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.50 | 41.0 | 2.72e-01 | 88.2% | 31.5% |
| 3902130 | 375.1.1.107 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Dynactin_p62 | 0.50 | 36.0 | 3.95e-01 | 82.4% | 91.3% |