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IMGVR_UViG_3300009503_000073-3300009503-Ga0123519_1000220331
Arc-VirIMGVR_UViG_3300009503_000073-3300009503-Ga0123519_1000220331
Identity
- Kingdom:
- archaea
Quality
85.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-98
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w43A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.76 | 61.0 | 6.49e-01 | 92.4% | 98.2% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.75 | 64.0 | 6.17e-01 | 93.9% | 92.0% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.71 | 64.0 | 6.26e-01 | 98.5% | 93.0% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.70 | 60.0 | 5.61e-01 | 93.9% | 85.2% |
| 1bqbA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.69 | 52.0 | 4.07e-01 | 95.5% | 37.5% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.68 | 37.0 | 3.87e-01 | 100.0% | 57.4% |
| 3ecsC01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.66 | 54.0 | 4.77e-01 | 92.4% | 60.0% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.65 | 55.0 | 4.37e-01 | 95.5% | 84.4% |
| 1nklA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.65 | 51.0 | 4.89e-01 | 100.0% | 74.4% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 55.0 | 5.16e-01 | 97.0% | 85.5% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 44.0 | 4.82e-01 | 100.0% | 100.0% |
| 2oebA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.62 | 53.0 | 4.17e-01 | 98.5% | 94.7% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 52.0 | 4.96e-01 | 93.9% | 84.6% |
| 7e4gA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.62 | 43.0 | 3.04e-01 | 71.2% | 30.5% |
| 6o0aA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 52.0 | 4.02e-01 | 93.9% | 79.9% |
| 8f2lE01 | 1.10.1740.110 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.62 | 48.0 | 4.25e-01 | 86.4% | 86.9% |
| 4p63D00 | 3.40.910.10 | Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase | 0.60 | 50.0 | 3.35e-01 | 100.0% | 25.6% |
| 3s63A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.59 | 48.0 | 4.41e-01 | 100.0% | 68.2% |
| 6n2nA01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.58 | 43.0 | 3.28e-01 | 83.3% | 65.7% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 45.0 | 4.68e-01 | 93.9% | 95.2% |
| 5xtck00 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 40.0 | 3.52e-01 | 75.8% | 63.9% |
| 7eu3E01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 39.0 | 3.60e-01 | 75.8% | 72.4% |
| 3aq5A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 37.0 | 3.18e-01 | 75.8% | 44.4% |
| 1r3dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 46.0 | 3.14e-01 | 100.0% | 58.4% |
| 3x0uB01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.52 | 43.0 | 2.97e-01 | 93.9% | 66.3% |
| 3k6hA01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.52 | 44.0 | 3.36e-01 | 98.5% | 83.2% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3720948 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 62.0 | 5.84e-01 | 98.5% | 74.7% |
| 3468296 | 148.1.1.25 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Tim17 | 0.74 | 64.0 | 5.11e-01 | 95.5% | 82.3% |
| 3594142 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 59.0 | 5.03e-01 | 100.0% | 54.3% |
| 3254841 | 101.1.2.198 ↗ | alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH | 0.74 | 52.0 | 4.42e-01 | 75.8% | 46.7% |
| 3587004 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.72 | 57.0 | 4.33e-01 | 100.0% | 37.6% |
| 4128053 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.72 | 52.0 | 5.68e-01 | 98.5% | 92.7% |
| 3411823 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.70 | 59.0 | 5.43e-01 | 100.0% | 71.8% |
| 3699966 | 148.1.3.10 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 | 0.70 | 58.0 | 4.88e-01 | 90.9% | 63.6% |
| 4426191 | 101.1.3.26 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › YcbB | 0.69 | 62.0 | 4.66e-01 | 100.0% | 79.4% |
| 3240699 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.69 | 47.0 | 4.62e-01 | 95.5% | 65.7% |
| 3286911 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 53.0 | 5.27e-01 | 100.0% | 84.3% |
| 3393016 | 101.1.2.526 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27602 | 0.67 | 50.0 | 4.85e-01 | 97.0% | 70.7% |
| 3897957 | 198.1.1.10 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin | 0.67 | 53.0 | 5.09e-01 | 98.5% | 75.0% |
| 3263335 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.66 | 53.0 | 5.04e-01 | 100.0% | 72.5% |
| 5053233 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.65 | 43.0 | 4.02e-01 | 89.4% | 52.9% |
| 3261028 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.65 | 52.0 | 4.82e-01 | 100.0% | 68.2% |
| 3706808 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 50.0 | 4.40e-01 | 81.8% | 86.3% |
| 4017461 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.65 | 50.0 | 4.45e-01 | 92.4% | 57.0% |
| 4126690 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.63 | 46.0 | 4.88e-01 | 97.0% | 96.4% |
| 4010412 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.62 | 47.0 | 4.99e-01 | 92.4% | 100.0% |
| 5027329 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.62 | 52.0 | 5.07e-01 | 100.0% | 84.0% |
| 4992012 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 47.0 | 4.85e-01 | 98.5% | 93.3% |
| 4073017 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.61 | 45.0 | 4.78e-01 | 98.5% | 98.2% |
| 3629401 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.61 | 51.0 | 5.09e-01 | 100.0% | 95.7% |
| 3901620 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.60 | 40.0 | 3.92e-01 | 100.0% | 64.3% |
| 3943035 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.58 | 46.0 | 4.70e-01 | 95.5% | 93.8% |
| 3871809 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.54 | 43.0 | 3.97e-01 | 84.8% | 100.0% |
| 4672687 | 108.1.1.27 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 | 0.54 | 47.0 | 4.24e-01 | 100.0% | 71.1% |
| 5038800 | 3579.1.1.1 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › Oxidored_q3 | 0.53 | 39.0 | 3.17e-01 | 78.8% | 43.1% |
| 4267024 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.53 | 38.0 | 3.65e-01 | 95.5% | 66.7% |
| 3825828 | 185.1.1.0 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 0.52 | 37.0 | 3.35e-01 | 98.5% | 53.7% |