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IMGVR_UViG_3300009506_001153-3300009506-Ga0118657_1002059222

Arc-Vir

IMGVR_UViG_3300009506_001153-3300009506-Ga0118657_1002059222

Quality

92.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-60_152-223
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07728.21 best AAA_5 29.8 7.70e-07 61.2% 53.2%
D2 high residues 79-148
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b4cA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 43.0 3.96e-01 75.7% 82.6%
3e0fA02 1.10.150.650 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.60 44.0 4.34e-01 80.0% 94.6%
2ihmB03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 37.0 3.28e-01 70.0% 90.4%
1qd1B02 3.30.70.670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain 0.55 40.0 3.19e-01 78.6% 59.3%
2ylmA03 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 38.0 3.49e-01 77.1% 87.6%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.53 34.0 3.12e-01 72.9% 51.1%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 36.0 3.72e-01 74.3% 98.5%
4gniB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 40.0 3.17e-01 85.7% 93.5%
3lovA02 3.90.660.20 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › Protoporphyrinogen oxidase, mitochondrial; domain 2 0.50 36.0 2.67e-01 77.1% 48.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3096050 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.76 55.0 4.74e-01 75.7% 65.4%
3707304 108.1.1.48 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_9 0.63 44.0 4.15e-01 74.3% 81.2%
1779586 101.1.2.64 alpha arrays › HTH › HTH › winged helix domain › Lant_dehydr_N 0.58 47.0 4.14e-01 92.9% 79.3%
2077327 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.58 45.0 4.18e-01 88.6% 84.0%
3277880 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.51 37.0 3.69e-01 80.0% 86.7%
D3 high residues 228-314
PDB
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ornA01 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.62 48.0 4.50e-01 98.9% 67.0%
1kg2A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.60 48.0 4.50e-01 98.9% 69.6%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 39.0 3.39e-01 98.9% 42.5%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.60 48.0 4.20e-01 90.8% 58.9%
6o0aA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 45.0 3.82e-01 87.4% 69.8%
2a5yB01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 42.0 3.93e-01 87.4% 88.1%
3cl3A02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 41.0 4.16e-01 86.2% 89.8%
6j8eA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.52 41.0 3.96e-01 90.8% 79.2%
4zb7A00 1.20.1050.130 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 39.0 3.25e-01 83.9% 48.0%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.52 36.0 4.03e-01 80.5% 94.0%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.51 37.0 3.38e-01 78.2% 57.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991154 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.89 84.0 8.10e-01 100.0% 98.9%
4931164 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.88 74.0 5.14e-01 90.8% 31.0%
4959355 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.87 74.0 5.09e-01 89.7% 30.2%
4078112 592.1.1.1 alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.63 47.0 4.85e-01 90.8% 87.3%
3997738 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 34.0 3.53e-01 87.4% 58.8%
3961048 4953.1.1.7 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › AI-2E_transport 0.56 44.0 4.40e-01 86.2% 86.7%
4025511 109.1.1.0 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.56 44.0 3.40e-01 86.2% 95.1%
3583061 524.1.1.8 alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC, RabGap-TBC_2 0.52 39.0 3.16e-01 81.6% 38.4%
3419225 101.1.10.56 alpha arrays › HTH › HTH › Cyclin-like › PF28509 0.52 40.0 3.82e-01 88.5% 71.8%
1683945 101.41.1.1 alpha arrays › HTH › MRB1590 C-terminal domain › MRB1590 C-terminal domain › MRB1590_C 0.52 40.0 3.51e-01 87.4% 87.5%
4963816 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.52 36.0 3.40e-01 72.4% 63.8%
3343807 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.51 39.0 3.98e-01 89.7% 88.2%
4248203 101.1.10.33 alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C 0.51 42.0 3.42e-01 97.7% 94.9%
3966930 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.51 38.0 3.54e-01 80.5% 65.5%
5007668 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.51 39.0 3.50e-01 83.9% 60.0%
4031948 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.50 36.0 3.37e-01 77.0% 60.0%
3256592 109.1.1.0 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.50 42.0 3.42e-01 98.9% 79.5%
3206364 109.1.1.11 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Arc1p_N_like 0.50 38.0 3.27e-01 83.9% 73.3%
D4 high residues 318-429
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ajcA01 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.70 47.0 4.91e-01 84.8% 74.0%
2yvyA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.69 48.0 4.65e-01 98.2% 64.8%
2xpzA04 1.25.40.320 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal domain 0.66 46.0 4.07e-01 72.3% 72.1%
5m9dA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 58.0 5.44e-01 99.1% 81.9%
3fp3A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 42.0 3.97e-01 100.0% 57.8%
1xd4A04 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.60 54.0 4.36e-01 100.0% 65.1%
2qk2A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 53.0 4.26e-01 100.0% 58.1%
4d0nB01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.59 41.0 3.22e-01 71.4% 63.3%
3wozB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 53.0 4.24e-01 100.0% 63.3%
3zheA02 1.25.40.760 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 51.0 4.28e-01 99.1% 65.2%
2ntxA01 1.20.58.2010 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 0.58 41.0 3.36e-01 73.2% 90.5%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.58 47.0 4.04e-01 87.5% 75.3%
2imsA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.57 42.0 3.76e-01 77.7% 60.7%
6j7xA01 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.57 50.0 3.84e-01 100.0% 42.2%
6kkiA01 1.20.1720.10 Mainly Alpha › Up-down Bundle › Multidrug resistance protein D › Multidrug resistance protein D 0.57 46.0 3.22e-01 86.6% 69.5%
5bz1A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.57 50.0 3.53e-01 100.0% 37.7%
4ikmA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.56 33.0 3.57e-01 100.0% 67.7%
3bwtA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 49.0 3.60e-01 100.0% 40.8%
2vvyA01 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.56 40.0 3.84e-01 75.9% 70.1%
1dbhA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.56 41.0 3.37e-01 77.7% 69.2%
2jbyA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.56 40.0 3.91e-01 75.9% 73.2%
2wocA00 1.10.4080.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 0.55 45.0 3.34e-01 87.5% 70.8%
3k49A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 49.0 3.49e-01 100.0% 36.8%
2e52B01 3.40.91.70 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Type II restriction endonuclease, HindIII 0.55 50.0 3.97e-01 100.0% 59.4%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 41.0 3.82e-01 99.1% 61.8%
6orcB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 40.0 3.79e-01 94.6% 64.2%
1wh4A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.54 32.0 3.42e-01 71.4% 68.1%
3rrcB01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.53 44.0 4.03e-01 93.8% 97.5%
4i16A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 31.0 3.43e-01 72.3% 71.1%
2xgvA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.53 39.0 3.71e-01 77.7% 70.7%
2wapA00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.52 46.0 2.99e-01 100.0% 83.9%
2pziB03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 42.0 3.85e-01 88.4% 72.0%
4a5dB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.52 40.0 3.19e-01 83.0% 51.7%
2qeuB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.51 44.0 4.21e-01 97.3% 88.7%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3885130 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 58.0 4.45e-01 100.0% 98.9%
3447684 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.63 47.0 4.48e-01 100.0% 66.7%
3315059 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.63 45.0 4.71e-01 99.1% 84.0%
3736646 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 52.0 3.57e-01 92.0% 69.4%
3251427 109.22.1.1 alpha superhelices › Repetitive alpha hairpins › Survival of motor neuron protein-interacting protein 1 › Survival of motor neuron protein-interacting protein 1 › SIP1 0.62 52.0 4.05e-01 99.1% 41.6%
3897842 5000.3.1.2 alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2,BH4 0.61 43.0 3.69e-01 74.1% 57.1%
3414662 5000.3.1.1 alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2 0.60 43.0 3.53e-01 74.1% 51.6%
4298231 2004.1.1.149 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SecA_DEAD 0.60 45.0 3.24e-01 79.5% 76.7%
3314799 109.4.1.16 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.60 47.0 4.16e-01 99.1% 55.4%
3831715 109.4.1.16 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.60 53.0 3.76e-01 100.0% 39.2%
3833881 6155.1.1.16 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PF28566 0.59 43.0 4.16e-01 76.8% 83.8%
4013622 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.59 41.0 3.48e-01 70.5% 73.5%
3648543 6155.1.1.16 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PF28566 0.59 43.0 3.61e-01 75.0% 57.9%
3847522 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 51.0 3.92e-01 100.0% 61.1%
3976707 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.58 40.0 3.35e-01 70.5% 64.6%
3522041 109.4.1.835 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INT10 0.58 45.0 4.28e-01 100.0% 70.4%
3356967 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.57 46.0 4.18e-01 100.0% 63.9%
3416951 5000.3.1.1 alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2 0.57 43.0 3.60e-01 79.5% 54.0%
3368054 109.4.1.16 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.57 50.0 3.45e-01 100.0% 33.3%
3941549 7014.1.1.2 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.56 40.0 3.11e-01 73.2% 75.8%
3926917 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 44.0 4.40e-01 100.0% 82.6%
2834026 109.4.1.158 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ERAP1_C 0.56 49.0 3.60e-01 100.0% 50.9%
4971808 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.56 40.0 2.98e-01 75.0% 98.3%
4177150 1075.5.1.12 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MurJ, Polysacc_synt_3 0.53 37.0 2.78e-01 71.4% 78.1%
3796076 110.1.1.0 alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.52 33.0 3.38e-01 74.1% 62.7%
3268025 109.4.1.109 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.51 43.0 3.23e-01 92.0% 66.3%
5010080 1075.3.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold 0.51 39.0 3.34e-01 84.8% 85.6%