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IMGVR_UViG_3300009506_001153-3300009506-Ga0118657_100205924
Arc-VirIMGVR_UViG_3300009506_001153-3300009506-Ga0118657_100205924
Identity
- Kingdom:
- archaea
Quality
90.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-53
Domain cluster:
representative
CATH (51)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1k0eB00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.67 | 45.0 | 2.64e-01 | 90.0% | 8.5% |
| 4paaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.67 | 46.0 | 2.90e-01 | 80.0% | 14.7% |
| 3ossC00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 46.0 | 4.28e-01 | 76.0% | 87.7% |
| 2codA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 49.0 | 3.94e-01 | 82.0% | 42.7% |
| 2zwrB00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.64 | 45.0 | 3.03e-01 | 76.0% | 91.3% |
| 4nkbB02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.63 | 44.0 | 3.71e-01 | 76.0% | 80.0% |
| 1c48A00 | 2.40.50.70 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 54.0 | 4.90e-01 | 100.0% | 82.6% |
| 1w5rA01 | 3.30.2140.10 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase | 0.62 | 43.0 | 2.95e-01 | 74.0% | 21.4% |
| 2hzmA02 | 2.20.140.20 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › | 0.62 | 46.0 | 3.94e-01 | 82.0% | 69.4% |
| 3ottB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 48.0 | 2.98e-01 | 90.0% | 92.1% |
| 2cs7A00 | 3.10.50.90 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.61 | 43.0 | 4.19e-01 | 76.0% | 70.9% |
| 3u50C01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 49.0 | 3.79e-01 | 98.0% | 73.2% |
| 2jrbA00 | 3.30.250.20 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain | 0.60 | 42.0 | 3.91e-01 | 90.0% | 58.5% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 44.0 | 3.65e-01 | 80.0% | 67.0% |
| 2nn5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 42.0 | 2.95e-01 | 76.0% | 49.7% |
| 3f0zA01 | 3.30.310.260 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.59 | 45.0 | 3.50e-01 | 84.0% | 71.4% |
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.59 | 49.0 | 3.92e-01 | 100.0% | 89.2% |
| 3rbtD01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 42.0 | 3.27e-01 | 80.0% | 64.0% |
| 1z9hA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 47.0 | 4.03e-01 | 88.0% | 98.8% |
| 4cswA02 | 3.40.366.30 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 | 0.58 | 51.0 | 3.51e-01 | 100.0% | 32.4% |
| 2eayB02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 37.0 | 3.78e-01 | 88.0% | 65.3% |
| 2fn0B00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.58 | 42.0 | 2.55e-01 | 88.0% | 10.0% |
| 2c9oB02 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.58 | 49.0 | 3.88e-01 | 100.0% | 74.3% |
| 2e8eA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.58 | 41.0 | 3.08e-01 | 100.0% | 28.8% |
| 4hhvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 45.0 | 3.63e-01 | 88.0% | 43.7% |
| 2kumA01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 42.0 | 4.13e-01 | 84.0% | 80.7% |
| 4kgmA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.57 | 41.0 | 2.74e-01 | 80.0% | 70.4% |
| 3ottA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 48.0 | 3.00e-01 | 96.0% | 92.6% |
| 2dy1A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 45.0 | 2.98e-01 | 100.0% | 88.4% |
| 1l1oF01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 44.0 | 3.48e-01 | 98.0% | 61.8% |
| 1tk7A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.56 | 38.0 | 4.30e-01 | 100.0% | 97.3% |
| 2y8nB02 | 2.20.70.100 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.55 | 36.0 | 3.74e-01 | 90.0% | 75.0% |
| 2a6aB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 42.0 | 3.31e-01 | 88.0% | 40.3% |
| 6l2cB00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 43.0 | 2.67e-01 | 100.0% | 68.4% |
| 2onfA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.54 | 42.0 | 3.10e-01 | 100.0% | 32.1% |
| 1sz2A02 | 3.40.367.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › | 0.54 | 40.0 | 2.72e-01 | 82.0% | 62.5% |
| 4qarA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.54 | 39.0 | 2.61e-01 | 76.0% | 92.3% |
| 4tr6A01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 45.0 | 3.18e-01 | 100.0% | 62.8% |
| 2avtB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 44.0 | 3.16e-01 | 100.0% | 62.8% |
| 2z86D02 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 43.0 | 2.84e-01 | 100.0% | 82.3% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 44.0 | 3.51e-01 | 100.0% | 92.0% |
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.52 | 43.0 | 3.21e-01 | 100.0% | 63.4% |
| 2wshA00 | 3.40.1440.40 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.52 | 42.0 | 3.20e-01 | 96.0% | 84.3% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.51 | 43.0 | 3.37e-01 | 100.0% | 80.6% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 34.0 | 2.67e-01 | 72.0% | 71.0% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 40.0 | 3.97e-01 | 94.0% | 82.5% |
| 1w4tA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.51 | 35.0 | 3.00e-01 | 76.0% | 73.7% |
| 1xkpC00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 42.0 | 3.28e-01 | 100.0% | 86.5% |
| 2dewX03 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.51 | 41.0 | 2.55e-01 | 100.0% | 69.2% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 43.0 | 3.96e-01 | 96.0% | 72.7% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.51 | 38.0 | 2.79e-01 | 92.0% | 48.3% |
ECOD (64)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3678375 | 10.32.1.210 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_PATL1_C | 0.86 | 40.0 | 2.84e-01 | 72.0% | 17.8% |
| 3964608 | 220.1.1.104 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin | 0.77 | 57.0 | 5.06e-01 | 80.0% | 65.7% |
| 3696336 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.68 | 50.0 | 4.03e-01 | 78.0% | 56.8% |
| 3289254 | 220.1.1.82 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 | 0.68 | 51.0 | 4.16e-01 | 82.0% | 55.8% |
| 3212411 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.68 | 52.0 | 3.34e-01 | 84.0% | 17.9% |
| 4065466 | 220.1.1.150 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 | 0.68 | 50.0 | 4.30e-01 | 80.0% | 50.0% |
| 4935756 | 242.2.1.0 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like | 0.68 | 45.0 | 4.45e-01 | 82.0% | 63.6% |
| 3247329 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.66 | 50.0 | 3.88e-01 | 82.0% | 39.1% |
| 4679015 | 220.1.1.150 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 | 0.66 | 49.0 | 4.22e-01 | 80.0% | 51.2% |
| 3603058 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.66 | 46.0 | 2.92e-01 | 74.0% | 87.8% |
| 3627795 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.64 | 48.0 | 4.06e-01 | 82.0% | 49.4% |
| 4278911 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.64 | 40.0 | 4.07e-01 | 74.0% | 62.0% |
| 3629491 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.64 | 48.0 | 4.67e-01 | 82.0% | 83.6% |
| 3789517 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.62 | 43.0 | 2.57e-01 | 78.0% | 9.3% |
| 3840027 | 218.1.1.9 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › PF27310 | 0.62 | 53.0 | 4.85e-01 | 100.0% | 78.6% |
| 4404324 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 44.0 | 3.77e-01 | 78.0% | 47.1% |
| 3801752 | 375.1.1.269 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29332 | 0.62 | 54.0 | 5.49e-01 | 100.0% | 100.0% |
| 3572708 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.61 | 46.0 | 3.55e-01 | 82.0% | 37.4% |
| 4651132 | 109.4.1.1297 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 | 0.61 | 38.0 | 2.11e-01 | 88.0% | 4.6% |
| 3216450 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.61 | 42.0 | 3.05e-01 | 82.0% | 24.7% |
| None | — | 0.60 | 44.0 | 2.80e-01 | 78.0% | 34.3% | |
| 3593233 | 719.2.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like | 0.60 | 48.0 | 3.79e-01 | 88.0% | 76.2% |
| 3414375 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 44.0 | 3.37e-01 | 82.0% | 33.6% |
| 5058752 | 2003.1.2.29 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 | 0.60 | 43.0 | 2.56e-01 | 78.0% | 39.0% |
| 4393186 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.60 | 44.0 | 4.07e-01 | 80.0% | 61.5% |
| 4960280 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 48.0 | 3.91e-01 | 98.0% | 47.4% |
| 4112122 | 386.1.1.81 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1391 | 0.59 | 39.0 | 4.14e-01 | 94.0% | 85.0% |
| 3748837 | 330.9.1.1 ↗ | a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p › Tnp_22_dsRBD | 0.59 | 45.0 | 3.82e-01 | 96.0% | 51.2% |
| 3903430 | 220.1.1.123 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st | 0.59 | 51.0 | 4.34e-01 | 100.0% | 72.9% |
| 4007827 | 386.1.1.81 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1391 | 0.59 | 39.0 | 4.15e-01 | 92.0% | 85.0% |
| 3822451 | 101.33.1.1 ↗ | alpha arrays › HTH › Replication foci-targeting sequence C-terminal domain › Replication foci-targeting sequence C-terminal domain › DNMT1-RFD | 0.59 | 40.0 | 2.98e-01 | 72.0% | 72.3% |
| 3267918 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 44.0 | 4.28e-01 | 82.0% | 74.5% |
| 4202176 | 220.1.1.123 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st | 0.58 | 50.0 | 3.42e-01 | 100.0% | 31.6% |
| 3996291 | 4351.1.1.1 ↗ | alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 | 0.58 | 49.0 | 3.25e-01 | 100.0% | 24.5% |
| 5001238 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 52.0 | 3.99e-01 | 100.0% | 61.8% |
| 3263180 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 42.0 | 3.36e-01 | 80.0% | 36.4% |
| 4884617 | 4001.1.1.4 ↗ | a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB | 0.57 | 36.0 | 2.99e-01 | 70.0% | 33.3% |
| 4162022 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.57 | 47.0 | 4.02e-01 | 92.0% | 80.0% |
| 3841716 | 220.1.1.123 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st | 0.57 | 49.0 | 3.54e-01 | 100.0% | 41.9% |
| 5079725 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 44.0 | 4.19e-01 | 100.0% | 71.7% |
| 3616718 | 207.1.1.85 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like | 0.57 | 40.0 | 2.40e-01 | 78.0% | 9.4% |
| 4001872 | 220.1.1.123 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st | 0.57 | 46.0 | 3.19e-01 | 94.0% | 37.8% |
| 3430385 | 4099.1.1.1 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD | 0.56 | 37.0 | 2.92e-01 | 100.0% | 28.0% |
| 4474942 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.56 | 46.0 | 4.17e-01 | 100.0% | 73.3% |
| 3720697 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 47.0 | 2.62e-01 | 96.0% | 51.3% |
| 3190584 | 2003.1.2.146 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N, FAD_binding_2 | 0.55 | 44.0 | 2.57e-01 | 100.0% | 80.8% |
| None | — | 0.55 | 48.0 | 2.88e-01 | 100.0% | 93.7% | |
| 3213519 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.55 | 37.0 | 2.82e-01 | 70.0% | 75.4% |
| 3839019 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 45.0 | 2.81e-01 | 94.0% | 26.3% |
| 3747082 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.54 | 43.0 | 3.58e-01 | 94.0% | 78.0% |
| 5022966 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.54 | 45.0 | 3.16e-01 | 100.0% | 92.8% |
| 3285086 | 3268.1.1.0 ↗ | a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase | 0.53 | 40.0 | 3.67e-01 | 86.0% | 84.0% |
| 5015831 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.53 | 44.0 | 3.28e-01 | 96.0% | 85.2% |
| 3474420 | 220.1.1.123 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st | 0.53 | 44.0 | 3.25e-01 | 100.0% | 40.7% |
| 3594717 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 38.0 | 2.83e-01 | 76.0% | 96.7% |
| 3829563 | 897.1.1.0 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 | 0.52 | 44.0 | 3.06e-01 | 94.0% | 61.8% |
| 3395585 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.52 | 42.0 | 3.98e-01 | 96.0% | 87.7% |
| 3249330 | 543.1.1.6 ↗ | few secondary structure elements › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related › PF29739 | 0.52 | 37.0 | 2.84e-01 | 84.0% | 53.0% |
| 4928056 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 38.0 | 3.83e-01 | 100.0% | 84.0% |
| 4952972 | 7520.1.1.2 ↗ | a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › HcgF | 0.52 | 42.0 | 2.97e-01 | 96.0% | 40.0% |
| 3604204 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 42.0 | 3.01e-01 | 100.0% | 99.4% |
| 3979711 | 252.2.1.6 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_2 | 0.51 | 42.0 | 3.97e-01 | 98.0% | 86.2% |
| 3679910 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.51 | 34.0 | 2.34e-01 | 74.0% | 16.7% |
| 3803542 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.50 | 41.0 | 3.12e-01 | 100.0% | 76.4% |
D2
high
residues 60-121
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1oxxK02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 41.0 | 4.69e-01 | 85.5% | 84.4% |
| 4fw1A02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.64 | 34.0 | 3.64e-01 | 87.1% | 57.4% |
| 3ge2A00 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.64 | 46.0 | 4.14e-01 | 77.4% | 88.8% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 39.0 | 4.02e-01 | 85.5% | 63.9% |
| 3fetA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.61 | 37.0 | 2.74e-01 | 82.3% | 23.0% |
| 4uoiC00 | 3.30.160.890 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C | 0.59 | 32.0 | 3.48e-01 | 100.0% | 60.8% |
| 7ue1B01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.59 | 48.0 | 3.85e-01 | 100.0% | 84.0% |
| 1xm8A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.59 | 51.0 | 3.35e-01 | 96.8% | 83.9% |
| 4bfeC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 46.0 | 3.88e-01 | 87.1% | 64.2% |
| 6fndA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 47.0 | 3.37e-01 | 90.3% | 61.3% |
| 2d9tA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 33.0 | 3.59e-01 | 87.1% | 67.3% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.57 | 45.0 | 3.81e-01 | 88.7% | 51.5% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 38.0 | 3.61e-01 | 100.0% | 57.3% |
| 7u32F02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.57 | 32.0 | 3.45e-01 | 91.9% | 62.7% |
| 1azpA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 35.0 | 3.47e-01 | 96.8% | 57.6% |
| 5f3yA05 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 47.0 | 4.44e-01 | 95.2% | 96.1% |
| 1hczA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.57 | 43.0 | 4.43e-01 | 96.8% | 88.1% |
| 3rlfF03 | 2.40.430.10 | Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP | 0.57 | 50.0 | 4.49e-01 | 100.0% | 71.6% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.57 | 38.0 | 3.56e-01 | 100.0% | 57.3% |
| 6lf2B01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.56 | 38.0 | 3.15e-01 | 72.6% | 99.2% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 40.0 | 4.11e-01 | 75.8% | 100.0% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 37.0 | 3.54e-01 | 91.9% | 58.3% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.55 | 34.0 | 3.57e-01 | 100.0% | 67.9% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.55 | 45.0 | 3.76e-01 | 100.0% | 50.4% |
| 6vlfA03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 38.0 | 3.89e-01 | 72.6% | 100.0% |
| 3zleA03 | 2.10.70.70 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.54 | 29.0 | 3.36e-01 | 100.0% | 76.9% |
| 7vljA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.53 | 42.0 | 3.76e-01 | 90.3% | 65.6% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 43.0 | 3.51e-01 | 100.0% | 46.0% |
| 4pmwA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 41.0 | 3.60e-01 | 83.9% | 75.8% |
| 3a1jB00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 44.0 | 2.98e-01 | 98.4% | 32.3% |
| 1sjiA03 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 40.0 | 3.33e-01 | 88.7% | 81.5% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 39.0 | 3.76e-01 | 98.4% | 72.6% |
| 1sxjH01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 44.0 | 3.55e-01 | 96.8% | 62.1% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.51 | 35.0 | 3.06e-01 | 71.0% | 63.3% |
| 1o97D01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 38.0 | 2.88e-01 | 88.7% | 48.1% |
| 1bkbA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 41.0 | 4.04e-01 | 88.7% | 87.7% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 40.0 | 4.13e-01 | 88.7% | 94.7% |
| 3bt7A02 | 2.40.50.1070 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 34.0 | 2.71e-01 | 71.0% | 57.2% |
| 6e4bA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.50 | 38.0 | 2.77e-01 | 85.5% | 99.5% |
| 2im9A02 | 2.30.260.10 | Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain | 0.50 | 38.0 | 3.01e-01 | 85.5% | 50.3% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.50 | 42.0 | 3.52e-01 | 96.8% | 78.1% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.50 | 35.0 | 3.13e-01 | 77.4% | 50.5% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3303020 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 40.0 | 4.43e-01 | 83.9% | 64.0% |
| 3317787 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 41.0 | 4.54e-01 | 85.5% | 66.0% |
| 3319421 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.76 | 41.0 | 4.54e-01 | 90.3% | 66.0% |
| 3942998 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.70 | 47.0 | 4.53e-01 | 100.0% | 61.4% |
| 3492787 | 3257.1.1.1 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N | 0.68 | 60.0 | 4.32e-01 | 98.4% | 55.7% |
| 4481026 | 4.1.1.407 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29661 | 0.68 | 40.0 | 4.12e-01 | 91.9% | 61.7% |
| 3509389 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.67 | 51.0 | 4.02e-01 | 82.3% | 70.0% |
| 3673032 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 45.0 | 4.37e-01 | 96.8% | 71.4% |
| 4168653 | 4.1.1.111 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_RapA | 0.60 | 35.0 | 3.84e-01 | 90.3% | 72.0% |
| 327025 | 6048.1.1.1 ↗ | a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 | 0.59 | 47.0 | 3.89e-01 | 88.7% | 50.0% |
| 4172303 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.59 | 36.0 | 2.82e-01 | 98.4% | 30.4% |
| 4950397 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 36.0 | 3.79e-01 | 85.5% | 70.9% |
| 3777241 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 49.0 | 4.10e-01 | 98.4% | 82.7% |
| 3494671 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 32.0 | 3.52e-01 | 87.1% | 71.1% |
| 3650304 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.56 | 35.0 | 3.57e-01 | 90.3% | 65.0% |
| None | — | 0.56 | 48.0 | 3.06e-01 | 98.4% | 80.6% | |
| 4126006 | 325.1.7.14 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RPOC_hybrid | 0.56 | 42.0 | 4.19e-01 | 98.4% | 78.5% |
| 3260369 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.55 | 36.0 | 4.03e-01 | 93.5% | 93.3% |
| 3281618 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.54 | 41.0 | 3.57e-01 | 83.9% | 73.0% |
| 4507316 | 220.1.1.20 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH | 0.54 | 40.0 | 3.37e-01 | 80.6% | 78.3% |
| 3998167 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.54 | 46.0 | 3.05e-01 | 100.0% | 23.6% |
| 4619221 | 5.1.3.136 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DPPIV_N, PD40 | 0.54 | 40.0 | 2.68e-01 | 82.3% | 99.6% |
| 5033076 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 38.0 | 4.08e-01 | 90.3% | 85.5% |
| 3506500 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.53 | 30.0 | 3.33e-01 | 88.7% | 74.4% |
| 3471615 | 220.1.1.158 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 | 0.53 | 46.0 | 3.81e-01 | 100.0% | 66.1% |
| 3558235 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.53 | 45.0 | 3.56e-01 | 98.4% | 64.4% |
| 3263031 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 38.0 | 3.78e-01 | 80.6% | 78.5% |
| 4227222 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.52 | 37.0 | 3.63e-01 | 77.4% | 81.4% |
| 4306285 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 44.0 | 4.27e-01 | 98.4% | 94.3% |
| 3237030 | 2.1.1.89 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term | 0.52 | 42.0 | 3.42e-01 | 88.7% | 82.6% |
| 4938828 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 36.0 | 3.68e-01 | 74.2% | 81.7% |
| 4087972 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.51 | 36.0 | 3.44e-01 | 77.4% | 72.2% |
| 4440689 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 38.0 | 3.83e-01 | 98.4% | 80.0% |
| 3292092 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.51 | 44.0 | 3.50e-01 | 100.0% | 53.7% |
| 3622643 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.51 | 35.0 | 3.28e-01 | 75.8% | 60.0% |
| 3586487 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 35.0 | 3.18e-01 | 79.0% | 54.1% |