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IMGVR_UViG_3300009506_001522-3300009506-Ga0118657_1002922024
Arc-VirIMGVR_UViG_3300009506_001522-3300009506-Ga0118657_1002922024
Identity
- Kingdom:
- archaea
Quality
93.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-71
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ofkA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.66 | 55.0 | 4.00e-01 | 95.6% | 73.5% |
| 4ep4A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.65 | 51.0 | 3.94e-01 | 88.2% | 98.8% |
| 2f22A00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.61 | 50.0 | 3.94e-01 | 100.0% | 43.7% |
| 6imeA01 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.61 | 48.0 | 3.29e-01 | 89.7% | 69.5% |
| 3wxmB03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.59 | 46.0 | 3.99e-01 | 85.3% | 67.3% |
| 1tjyA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 41.0 | 3.22e-01 | 73.5% | 47.7% |
| 1eamA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 50.0 | 3.39e-01 | 100.0% | 62.1% |
| 3d02A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 41.0 | 3.24e-01 | 76.5% | 51.0% |
| 3ugsB00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.57 | 46.0 | 3.39e-01 | 92.6% | 45.7% |
| 3i45A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 39.0 | 2.98e-01 | 73.5% | 39.4% |
| 1ne2B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 47.0 | 3.59e-01 | 98.5% | 91.3% |
| 1mgpA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.57 | 43.0 | 3.56e-01 | 80.9% | 79.3% |
| 1x19A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 46.0 | 3.64e-01 | 95.6% | 87.5% |
| 4eqbA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 48.0 | 3.78e-01 | 100.0% | 99.4% |
| 2q0iA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 48.0 | 3.20e-01 | 100.0% | 55.7% |
| 2rjoA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 39.0 | 3.00e-01 | 76.5% | 44.5% |
| 1pvgA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.55 | 42.0 | 2.92e-01 | 85.3% | 76.6% |
| 1yawB01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.54 | 39.0 | 3.27e-01 | 80.9% | 59.7% |
| 4f7oA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.54 | 45.0 | 3.21e-01 | 100.0% | 53.6% |
| 4n7bA03 | 3.40.1010.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain | 0.54 | 43.0 | 3.93e-01 | 91.2% | 90.7% |
| 5yznA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 42.0 | 2.97e-01 | 92.6% | 57.3% |
| 3h75A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 37.0 | 3.05e-01 | 76.5% | 58.3% |
| 7essA01 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.52 | 41.0 | 3.37e-01 | 88.2% | 97.7% |
| 3fovA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 42.0 | 3.67e-01 | 88.2% | 72.5% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 36.0 | 3.17e-01 | 73.5% | 69.9% |
| 3ib5A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.51 | 42.0 | 2.70e-01 | 92.6% | 31.9% |
| 4r16A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 43.0 | 3.21e-01 | 98.5% | 51.9% |
| 3bt7A02 | 2.40.50.1070 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 42.0 | 3.35e-01 | 92.6% | 84.1% |
| 1j7gA00 | 3.50.80.10 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-tyrosyl-tRNA(Tyr) deacylase | 0.51 | 40.0 | 3.24e-01 | 89.7% | 91.0% |
| 1oi2A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.50 | 36.0 | 2.90e-01 | 80.9% | 92.6% |
| 3cniA00 | 3.40.1710.10 | Alpha Beta › 3-Layer(aba) Sandwich › abc type-2 transporter like fold › abc type-2 transporter like domain | 0.50 | 38.0 | 3.09e-01 | 85.3% | 89.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3959848 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 51.0 | 4.15e-01 | 85.3% | 47.2% |
| 56810 | 620.1.1.0 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases | 0.65 | 51.0 | 4.05e-01 | 100.0% | 41.8% |
| 4944935 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.65 | 54.0 | 3.49e-01 | 94.1% | 77.8% |
| 4029780 | 2003.1.6.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin | 0.64 | 49.0 | 3.47e-01 | 85.3% | 96.9% |
| 3452018 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.64 | 50.0 | 4.16e-01 | 86.8% | 85.5% |
| 3406499 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 50.0 | 3.60e-01 | 92.6% | 86.4% |
| 3716644 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.61 | 49.0 | 2.97e-01 | 88.2% | 28.5% |
| 5052736 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.61 | 52.0 | 3.85e-01 | 100.0% | 64.6% |
| 3422461 | 207.1.1.95 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 | 0.61 | 50.0 | 3.30e-01 | 92.6% | 33.3% |
| 4028 | 620.1.1.2 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB | 0.61 | 50.0 | 3.95e-01 | 100.0% | 44.0% |
| 3284333 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.59 | 52.0 | 3.48e-01 | 100.0% | 50.4% |
| 5042006 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.59 | 52.0 | 3.64e-01 | 100.0% | 69.8% |
| 3584552 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.59 | 48.0 | 2.98e-01 | 94.1% | 34.3% |
| 2526237 | 2003.1.6.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like | 0.58 | 46.0 | 3.26e-01 | 89.7% | 91.5% |
| 4943725 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.58 | 47.0 | 3.32e-01 | 98.5% | 97.7% |
| 3284316 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.57 | 48.0 | 3.24e-01 | 95.6% | 62.8% |
| 3679568 | 207.1.1.95 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 | 0.57 | 49.0 | 3.05e-01 | 100.0% | 25.3% |
| 4425456 | 2004.1.1.68 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IstB_IS21 | 0.57 | 48.0 | 3.45e-01 | 98.5% | 50.9% |
| 145520 | 7534.1.1.1 ↗ | a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf | 0.57 | 46.0 | 3.39e-01 | 92.6% | 45.7% |
| 3597544 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.57 | 44.0 | 3.69e-01 | 88.2% | 92.3% |
| 3194087 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 47.0 | 2.92e-01 | 100.0% | 29.9% |
| 4664847 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.55 | 39.0 | 3.04e-01 | 73.5% | 52.0% |
| 5027476 | 2008.1.1.17 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 | 0.55 | 47.0 | 4.21e-01 | 98.5% | 99.0% |
| 3598372 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 45.0 | 3.38e-01 | 100.0% | 51.3% |
| 3728191 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 42.0 | 3.21e-01 | 89.7% | 94.4% |
| 3644681 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.53 | 44.0 | 3.42e-01 | 98.5% | 85.3% |
| 3770210 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.53 | 38.0 | 3.11e-01 | 77.9% | 53.3% |
| 4931870 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 43.0 | 3.10e-01 | 100.0% | 51.9% |
| 5027880 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.51 | 36.0 | 3.24e-01 | 73.5% | 61.1% |
| 4036339 | 327.11.1.18 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › DNA_pol3_a_NI | 0.51 | 35.0 | 3.44e-01 | 72.1% | 81.3% |
| 4932913 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.51 | 36.0 | 3.28e-01 | 73.5% | 65.6% |
| 5046175 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.50 | 43.0 | 3.16e-01 | 100.0% | 74.6% |
| 3182836 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.50 | 44.0 | 3.32e-01 | 100.0% | 76.5% |