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IMGVR_UViG_3300009506_001522-3300009506-Ga0118657_1002922026

Arc-Vir

IMGVR_UViG_3300009506_001522-3300009506-Ga0118657_1002922026

Quality

74.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-86
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qmfB01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.78 43.0 4.42e-01 77.4% 56.1%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.70 47.0 4.15e-01 78.6% 47.5%
5i0hA02 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.65 43.0 4.57e-01 77.4% 77.8%
2lu2A00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 38.0 3.87e-01 78.6% 59.3%
7eehA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.65 55.0 4.04e-01 97.6% 83.9%
6w72A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 41.0 3.53e-01 77.4% 40.5%
3ajdA01 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.65 33.0 3.82e-01 76.2% 66.7%
3euhD01 1.10.10.2250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 48.0 5.13e-01 100.0% 95.7%
3zihA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.64 44.0 4.51e-01 97.6% 74.7%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 35.0 3.92e-01 76.2% 69.8%
7ewfB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.94e-01 97.6% 90.7%
2qv6A01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.63 44.0 3.78e-01 78.6% 46.9%
2zbiA02 3.30.70.2120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 46.0 4.27e-01 78.6% 67.9%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.81e-01 100.0% 82.6%
5xgbA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.62 41.0 3.22e-01 78.6% 31.3%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 4.35e-01 100.0% 81.6%
4p47A00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.60 46.0 3.12e-01 83.3% 53.1%
3va7A05 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.60 38.0 3.65e-01 81.0% 54.0%
3qz0A00 6.10.250.2300 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 48.0 5.03e-01 86.9% 91.0%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 41.0 4.33e-01 81.0% 80.0%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 46.0 3.16e-01 84.5% 48.3%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.58 45.0 4.63e-01 100.0% 91.4%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.58 44.0 4.63e-01 100.0% 100.0%
5vt9B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 38.0 4.09e-01 98.8% 78.1%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 4.59e-01 100.0% 100.0%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 41.0 3.55e-01 82.1% 48.1%
6u26A01 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.58 42.0 4.19e-01 83.3% 72.7%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.58 50.0 3.42e-01 98.8% 52.6%
7bqjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 4.19e-01 100.0% 81.5%
4v1al00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.55 36.0 3.13e-01 81.0% 42.1%
3gwzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.94e-01 100.0% 74.2%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 4.14e-01 97.6% 73.6%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.54 46.0 4.42e-01 97.6% 89.8%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 4.35e-01 100.0% 100.0%
7xhzA01 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.53 42.0 3.76e-01 88.1% 100.0%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.53 32.0 3.39e-01 82.1% 69.4%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.52 41.0 4.01e-01 85.7% 100.0%
1o9nA00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.52 44.0 2.86e-01 100.0% 19.4%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.97e-01 100.0% 80.2%
1xb4B01 1.10.10.570 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" 0.52 41.0 3.85e-01 92.9% 70.2%
4dw8A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.52 42.0 3.90e-01 88.1% 97.2%
2v8pA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.51 37.0 3.40e-01 77.4% 76.5%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.83e-01 98.8% 71.7%
2zogA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 40.0 2.76e-01 98.8% 23.7%
4ayoA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.50 42.0 2.68e-01 92.9% 31.1%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3597940 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.76 43.0 4.27e-01 78.6% 53.3%
4598614 304.48.1.22 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.71 47.0 4.13e-01 77.4% 46.7%
4977412 304.48.1.22 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.71 48.0 4.24e-01 78.6% 48.3%
3603883 304.48.1.22 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.71 48.0 4.09e-01 78.6% 44.6%
4284745 304.48.1.22 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.70 48.0 4.19e-01 78.6% 48.3%
3967651 101.1.2.378 alpha arrays › HTH › HTH › winged helix domain › MksE 0.69 47.0 5.38e-01 97.6% 100.0%
4335903 304.48.1.22 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.68 43.0 3.96e-01 78.6% 49.1%
4145731 304.48.1.22 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.67 44.0 4.07e-01 78.6% 51.8%
3743678 148.1.3.41 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM5_C 0.67 51.0 5.52e-01 98.8% 98.6%
4094511 304.48.1.22 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.67 44.0 4.00e-01 78.6% 49.6%
3222445 148.1.3.41 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM5_C 0.66 51.0 5.50e-01 98.8% 100.0%
3314359 320.1.1.11 a+b two layers › R3H domain-like › R3H domain › R3H domain › PF27261 0.66 44.0 4.62e-01 94.0% 76.0%
4015092 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 51.0 5.51e-01 98.8% 100.0%
4420776 3492.1.1.1 a+b two layers › Chromosome partition protein mukE N-terminal domain › Chromosome partition protein mukE N-terminal domain › Chromosome partition protein mukE N-terminal domain › MukE 0.66 46.0 3.42e-01 96.4% 27.7%
4011288 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.65 45.0 5.09e-01 100.0% 100.0%
3988118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 4.97e-01 100.0% 80.0%
5078195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 51.0 5.39e-01 89.3% 97.3%
4503633 304.48.1.22 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.64 44.0 3.73e-01 78.6% 44.4%
3958386 101.1.2.670 alpha arrays › HTH › HTH › winged helix domain › DUF4194 0.63 46.0 4.69e-01 100.0% 80.0%
4927941 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.63 40.0 2.68e-01 81.0% 16.6%
1633251 3618.1.1.1 beta complex topology › Flagellin beta sheet domain › Flagellin beta sheet domain › Flagellin beta sheet domain › Flagellin_IN 0.63 46.0 4.05e-01 77.4% 58.9%
3246949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 53.0 5.38e-01 100.0% 100.0%
5049534 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.92e-01 94.0% 84.7%
5048344 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 5.09e-01 96.4% 98.6%
5000704 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 4.78e-01 100.0% 83.3%
3808360 101.1.2.528 alpha arrays › HTH › HTH › winged helix domain › PF31130 0.61 53.0 4.78e-01 100.0% 83.2%
4426232 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.61 51.0 5.00e-01 95.2% 90.0%
5034659 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.61 33.0 3.37e-01 77.4% 52.9%
4950213 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 4.41e-01 100.0% 71.0%
3412336 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.81e-01 100.0% 87.1%
4436233 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.60 47.0 3.24e-01 84.5% 50.5%
4284044 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 53.0 4.39e-01 100.0% 91.3%
3740265 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.59 47.0 4.48e-01 97.6% 72.4%
5035624 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.59 46.0 4.65e-01 100.0% 87.1%
3608085 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.59 48.0 4.64e-01 100.0% 80.9%
3168448 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.58 48.0 4.26e-01 100.0% 61.2%
4997662 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 4.01e-01 100.0% 61.8%
3589096 101.1.2.700 alpha arrays › HTH › HTH › winged helix domain › DUF7662 0.58 49.0 4.95e-01 97.6% 95.3%
3939022 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 50.0 5.04e-01 100.0% 98.8%
3284487 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.57 49.0 3.19e-01 100.0% 74.2%
4996620 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 50.0 4.95e-01 100.0% 93.3%
4978789 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 48.0 4.68e-01 100.0% 87.4%
3498514 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 4.61e-01 97.6% 100.0%
3994510 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.92e-01 100.0% 55.0%
3276448 109.4.1.58 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Not1 0.56 45.0 3.61e-01 92.9% 44.9%
4946048 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 4.41e-01 98.8% 91.3%
4943320 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.97e-01 100.0% 62.5%
4511189 101.1.2.10 alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.55 39.0 4.03e-01 82.1% 78.8%
3195581 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.54 41.0 2.78e-01 79.8% 88.3%
None 0.54 40.0 3.02e-01 78.6% 34.2%
3593319 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.53 42.0 3.33e-01 86.9% 56.8%
4032715 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.53 42.0 3.70e-01 85.7% 96.8%
4307544 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.53 38.0 3.51e-01 77.4% 77.2%
3526352 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.52 40.0 3.39e-01 83.3% 80.0%
3648804 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 4.06e-01 100.0% 75.7%
4025053 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.52 44.0 4.30e-01 100.0% 91.6%
3365938 101.1.2.37 alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.52 41.0 4.13e-01 100.0% 87.8%
164668 304.1.1.0 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.52 37.0 3.41e-01 77.4% 76.5%
4654431 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.51 37.0 3.39e-01 77.4% 78.3%
3521467 3016.1.1.21 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen 0.51 42.0 4.12e-01 89.3% 96.7%
3722124 101.1.2.165 alpha arrays › HTH › HTH › winged helix domain › ORC_WH_C 0.51 45.0 3.92e-01 100.0% 80.3%
3737595 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.51 43.0 3.17e-01 97.6% 33.7%
3387986 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.51 36.0 2.68e-01 100.0% 26.7%
5045315 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.82e-01 100.0% 68.7%
D2 medium residues 88-119
PDB