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IMGVR_UViG_3300009506_001742-3300009506-Ga0118657_1001427616
Arc-VirIMGVR_UViG_3300009506_001742-3300009506-Ga0118657_1001427616
Identity
- Kingdom:
- archaea
Quality
88.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 139-229
Domain cluster:
representative
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4004088 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.50 | 21.0 | 2.96e-01 | 83.5% | 77.5% |
| 3220597 | 7515.1.1.5 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C | 0.50 | 38.0 | 2.44e-01 | 85.7% | 91.7% |
| 5017812 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.50 | 36.0 | 2.95e-01 | 76.9% | 61.6% |
D2
medium
residues 1-31_101-120_230-278
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7a2dA01 | 6.10.20.90 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › Hk620 tailspike protein, N-terminal domain-like | 0.61 | 31.0 | 3.55e-01 | 80.0% | 64.8% |
| 1g0nB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 44.0 | 3.33e-01 | 78.0% | 72.4% |
| 3a43A01 | 3.30.2320.50 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.54 | 34.0 | 3.73e-01 | 78.0% | 79.7% |
| 1ct9B02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 46.0 | 3.33e-01 | 98.0% | 69.3% |
| 5iz4A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 42.0 | 3.26e-01 | 89.0% | 75.7% |
| 1gkuB05 | 3.40.50.140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 43.0 | 4.08e-01 | 90.0% | 81.0% |
| 3oidC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 42.0 | 3.24e-01 | 90.0% | 72.2% |
| 4j0eA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 41.0 | 3.29e-01 | 85.0% | 69.3% |
| 1dusA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 42.0 | 3.47e-01 | 91.0% | 87.6% |
| 1f14A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 41.0 | 3.31e-01 | 86.0% | 71.4% |
| 4gniB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 40.0 | 3.51e-01 | 85.0% | 75.8% |
| 5lstA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 44.0 | 3.50e-01 | 97.0% | 84.7% |
| 2wtbA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 41.0 | 3.40e-01 | 87.0% | 72.2% |
| 4e12A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 40.0 | 3.26e-01 | 85.0% | 71.0% |
| 1nijA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 44.0 | 3.53e-01 | 96.0% | 86.6% |
| 3iprA00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.51 | 41.0 | 3.76e-01 | 89.0% | 86.9% |
| 3i3oG00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 43.0 | 3.24e-01 | 93.0% | 74.7% |
| 3ocjA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 40.0 | 2.91e-01 | 87.0% | 77.3% |
| 3euaA03 | 3.40.50.12570 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 38.0 | 3.91e-01 | 81.0% | 88.3% |
| 4dcmA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 42.0 | 3.53e-01 | 92.0% | 93.7% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3971370 | 3261.1.1.1 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON | 0.64 | 32.0 | 3.70e-01 | 80.0% | 65.7% |
| 5057097 | 3261.1.1.1 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON | 0.62 | 30.0 | 3.54e-01 | 79.0% | 64.3% |
| 4991181 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.60 | 32.0 | 3.82e-01 | 80.0% | 78.5% |
| 4442243 | 327.1.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Alpha-lytic protease prodomain › Alpha-lytic protease prodomain › Pro_Al_protease | 0.59 | 31.0 | 3.58e-01 | 81.0% | 68.6% |
| 4013455 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.59 | 44.0 | 3.30e-01 | 79.0% | 74.7% |
| 4988770 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.54 | 44.0 | 3.70e-01 | 89.0% | 88.0% |
| 4939492 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.54 | 42.0 | 3.93e-01 | 84.0% | 79.2% |
| 4261023 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.54 | 43.0 | 3.24e-01 | 89.0% | 64.8% |
| 1890694 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.54 | 43.0 | 3.29e-01 | 89.0% | 69.9% |
| 3958868 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.54 | 45.0 | 3.20e-01 | 93.0% | 76.2% |
| 3594592 | 2007.1.13.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase | 0.53 | 42.0 | 3.82e-01 | 85.0% | 78.5% |
| None | — | 0.53 | 45.0 | 3.18e-01 | 98.0% | 84.4% | |
| 1827849 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.53 | 42.0 | 3.26e-01 | 89.0% | 75.7% |
| 4953385 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.53 | 44.0 | 3.10e-01 | 93.0% | 88.1% |
| 3253750 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.53 | 33.0 | 3.57e-01 | 82.0% | 77.5% |
| 3290917 | 2003.1.1.148 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short, KR | 0.52 | 42.0 | 3.23e-01 | 89.0% | 80.4% |
| 4883934 | 2003.1.1.155 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N, F420_oxidored | 0.52 | 41.0 | 3.40e-01 | 85.0% | 73.6% |
| 5037266 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.52 | 44.0 | 3.04e-01 | 93.0% | 85.9% |
| 3733159 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.52 | 42.0 | 3.20e-01 | 89.0% | 83.1% |
| 3656169 | 2003.1.1.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.52 | 42.0 | 3.18e-01 | 90.0% | 73.9% |
| 4016876 | 2003.1.5.27 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › NAS | 0.52 | 45.0 | 3.20e-01 | 96.0% | 80.0% |
| 3556576 | 2003.1.1.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N | 0.52 | 41.0 | 3.26e-01 | 86.0% | 66.7% |
| None | — | 0.52 | 41.0 | 3.25e-01 | 86.0% | 66.7% | |
| 3223911 | 2003.1.1.155 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N, F420_oxidored | 0.51 | 40.0 | 3.27e-01 | 85.0% | 72.0% |
| 4167252 | 7574.1.1.8 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Transket_pyr | 0.51 | 44.0 | 3.70e-01 | 97.0% | 93.1% |
| 3966981 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.51 | 46.0 | 3.15e-01 | 99.0% | 84.1% |
| 4974788 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.51 | 41.0 | 3.18e-01 | 91.0% | 92.0% |
| 4465856 | 247.1.1.33 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.51 | 41.0 | 3.00e-01 | 91.0% | 48.7% |
| 4956614 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.51 | 42.0 | 3.08e-01 | 94.0% | 98.7% |
| 3704515 | 2003.1.1.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N | 0.50 | 40.0 | 3.16e-01 | 86.0% | 65.1% |
| 5074908 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.50 | 44.0 | 3.77e-01 | 99.0% | 73.2% |
| None | — | 0.50 | 42.0 | 3.09e-01 | 93.0% | 62.1% | |
| 5018354 | 10.18.1.0 ↗ | beta sandwiches › jelly-roll › VPA0735-like › VPA0735-like | 0.50 | 42.0 | 3.15e-01 | 91.0% | 62.4% |
| 3433557 | 7516.1.1.114 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › PF28143 | 0.50 | 35.0 | 2.43e-01 | 72.0% | 28.7% |
| 3948010 | 2003.1.1.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N | 0.50 | 40.0 | 3.26e-01 | 87.0% | 69.2% |
D3
medium
residues 32-100_121-138
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t3yA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.50 | 37.0 | 3.29e-01 | 79.3% | 57.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4965661 | 327.7.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C | 0.51 | 35.0 | 3.58e-01 | 71.3% | 94.1% |
| 3398633 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.50 | 37.0 | 3.27e-01 | 79.3% | 63.0% |