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IMGVR_UViG_3300009506_001879-3300009506-Ga0118657_1004507620

Arc-Vir

IMGVR_UViG_3300009506_001879-3300009506-Ga0118657_1004507620

Identity

Kingdom:
archaea

Quality

81.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-119
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pu2B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 51.0 4.58e-01 80.5% 80.4%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.65 45.0 4.16e-01 70.8% 81.8%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.65 42.0 4.51e-01 83.2% 78.5%
1xuvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 49.0 4.30e-01 79.6% 78.5%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 50.0 4.33e-01 83.2% 76.2%
2lf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 47.0 4.05e-01 79.6% 77.7%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.61 25.0 3.12e-01 85.0% 60.9%
2c5wB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 53.0 3.66e-01 94.7% 89.4%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.60 42.0 4.26e-01 71.7% 74.3%
1q9uA00 3.30.310.70 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TT1751-like domain 0.60 42.0 4.04e-01 71.7% 78.9%
3udfA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 52.0 3.65e-01 94.7% 87.3%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.60 47.0 4.50e-01 100.0% 71.1%
1914A00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.59 39.0 3.32e-01 79.6% 44.4%
3zg9B02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 50.0 3.59e-01 95.6% 93.3%
1cqaA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.58 47.0 4.57e-01 86.7% 91.1%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 4.30e-01 82.3% 100.0%
6nhsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 44.0 3.50e-01 87.6% 96.7%
3weoA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.54 47.0 3.61e-01 94.7% 97.7%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.54 42.0 3.57e-01 83.2% 93.1%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 36.0 3.90e-01 100.0% 82.3%
4gouA02 2.30.29.200 Mainly Beta › Roll › PH-domain like › 0.53 41.0 3.64e-01 81.4% 67.1%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 4.35e-01 82.3% 95.7%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.52 33.0 3.48e-01 85.0% 68.9%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.88e-01 99.1% 81.6%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 4.08e-01 82.3% 92.2%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.87e-01 100.0% 79.8%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 4.15e-01 82.3% 91.7%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.99e-01 81.4% 89.6%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 4.00e-01 82.3% 99.1%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.91e-01 82.3% 94.1%
4y2fA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.50 42.0 3.90e-01 89.4% 74.1%
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.59e-01 82.3% 76.0%
1xzpB00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.50 35.0 3.39e-01 78.8% 63.4%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018772 304.55.2.0 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.67 30.0 3.34e-01 70.8% 51.6%
3953823 881.1.1.35 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF25845 0.64 59.0 5.24e-01 98.2% 73.5%
3910321 391.1.2.23 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWD 0.61 43.0 3.27e-01 71.7% 63.3%
4936584 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.61 40.0 4.27e-01 86.7% 76.8%
4095609 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.61 42.0 3.90e-01 70.8% 77.1%
4253589 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.60 49.0 4.73e-01 87.6% 92.3%
3771735 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.59 42.0 3.36e-01 72.6% 75.2%
5036533 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.57 43.0 3.47e-01 80.5% 95.6%
5007172 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.57 41.0 3.91e-01 76.1% 98.5%
3892945 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.56 39.0 3.15e-01 71.7% 74.0%
5043905 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.56 43.0 3.46e-01 80.5% 96.4%
3756160 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.55 40.0 3.66e-01 98.2% 58.6%
3566967 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.55 38.0 4.00e-01 83.2% 77.1%
3792816 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.55 39.0 3.88e-01 99.1% 70.0%
4241417 219.1.1.21 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.54 48.0 3.82e-01 99.1% 96.6%
3430523 220.1.1.171 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7135 0.54 42.0 3.86e-01 100.0% 64.3%
3923930 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 39.0 4.01e-01 99.1% 77.3%
3259572 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 42.0 3.76e-01 82.3% 69.0%
3890750 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 4.45e-01 82.3% 97.8%
1822301 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.53 38.0 2.50e-01 73.5% 88.0%
3417907 304.48.1.37 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.53 45.0 3.35e-01 88.5% 80.8%
4146498 220.1.1.25 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.53 42.0 4.44e-01 82.3% 95.0%
3734376 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.53 41.0 4.15e-01 81.4% 81.8%
3516397 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.52 39.0 3.27e-01 76.1% 65.9%
3931203 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 41.0 3.88e-01 82.3% 80.7%
3167802 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.52 40.0 4.17e-01 82.3% 84.3%
3890749 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 38.0 4.28e-01 82.3% 95.6%
3250881 220.1.1.125 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 0.52 41.0 3.60e-01 82.3% 70.0%
3563663 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.52 41.0 4.35e-01 82.3% 92.0%
3619334 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 4.25e-01 82.3% 96.7%
3890869 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.51 40.0 3.38e-01 81.4% 57.2%
3595376 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.18e-01 81.4% 51.2%
3616221 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 40.0 3.53e-01 83.2% 59.4%
1833801 220.1.1.25 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.51 40.0 4.15e-01 82.3% 91.7%
3939762 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 40.0 4.06e-01 81.4% 91.8%
3873394 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.51 40.0 3.54e-01 81.4% 65.8%
3518065 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.51 40.0 3.76e-01 82.3% 76.3%
4467900 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.51 41.0 3.33e-01 86.7% 74.8%
4002416 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.50 39.0 3.48e-01 82.3% 65.6%
3584295 220.1.1.118 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › RHG20_PH 0.50 35.0 3.45e-01 72.6% 81.6%
3916099 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.50 37.0 3.16e-01 76.1% 67.2%
4488000 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 39.0 3.94e-01 82.3% 87.8%