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IMGVR_UViG_3300009506_002491-3300009506-Ga0118657_1003823714

Arc-Vir

IMGVR_UViG_3300009506_002491-3300009506-Ga0118657_1003823714

Identity

Kingdom:
archaea

Quality

89.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 124-182
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3w5xA00 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.65 47.0 4.29e-01 96.6% 57.5%
5zeeB00 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.64 55.0 3.49e-01 98.3% 31.6%
4uuwA01 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.61 41.0 3.05e-01 96.6% 25.0%
1h7nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 53.0 3.26e-01 98.3% 16.8%
2pidA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 52.0 3.51e-01 98.3% 75.7%
8dpkD01 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.60 48.0 3.17e-01 91.5% 33.6%
6p8vA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 51.0 3.57e-01 100.0% 49.3%
4m8kA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.59 50.0 3.45e-01 96.6% 72.3%
1qhhD01 3.30.160.800 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 45.0 4.20e-01 94.9% 67.1%
3fg9C01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 49.0 3.81e-01 98.3% 41.4%
2ag5C00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 47.0 3.16e-01 93.2% 60.7%
2j5bB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 48.0 3.41e-01 96.6% 46.7%
2vhaA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 45.0 3.30e-01 94.9% 30.0%
7l9pE01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 47.0 3.28e-01 100.0% 26.4%
2zskA01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 47.0 3.81e-01 94.9% 69.0%
5fb0A02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.56 43.0 3.54e-01 86.4% 55.4%
3f2vA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.55 42.0 3.00e-01 83.1% 43.1%
4mhxA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.54 48.0 2.82e-01 100.0% 33.8%
2fqqA01 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 44.0 3.53e-01 98.3% 97.0%
1kc0A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 40.0 2.60e-01 84.7% 50.3%
4q0mA01 3.40.50.1170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain 0.51 39.0 2.75e-01 84.7% 67.3%
1dbrC00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 2.92e-01 89.8% 28.4%
4aibA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.50 41.0 2.82e-01 91.5% 35.5%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 40.0 2.97e-01 98.3% 31.7%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5013855 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.67 53.0 4.43e-01 86.4% 88.0%
3419493 207.1.1.95 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.66 46.0 2.84e-01 94.9% 11.9%
3460829 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.65 47.0 3.55e-01 96.6% 31.0%
3593602 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.65 46.0 3.21e-01 74.6% 95.4%
3590976 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.62 54.0 4.12e-01 98.3% 41.7%
3715900 3979.1.1.0 ↗ a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain 0.61 53.0 4.23e-01 100.0% 82.4%
8769 2002.1.1.24 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ALAD 0.61 53.0 3.26e-01 98.3% 16.8%
3258934 301.6.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like 0.60 52.0 3.51e-01 96.6% 27.4%
3635988 7590.1.1.7 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI 0.60 51.0 3.41e-01 94.9% 39.1%
3638529 315.1.1.0 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF 0.59 48.0 4.78e-01 89.8% 90.5%
3482811 2007.2.5.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase 0.59 44.0 3.19e-01 81.4% 45.3%
3501881 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.59 50.0 3.44e-01 98.3% 27.7%
3535899 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.58 48.0 3.16e-01 93.2% 50.6%
3668810 3979.1.1.1 ↗ a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11_DNA_bind 0.58 46.0 4.00e-01 89.8% 92.6%
3960245 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.57 43.0 3.15e-01 83.1% 67.1%
1520986 7523.1.1.4 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 0.57 46.0 3.65e-01 94.9% 42.5%
3980781 7523.1.1.4 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 0.57 45.0 2.98e-01 94.9% 19.4%
1201190 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.57 46.0 3.36e-01 93.2% 32.0%
2561693 2002.1.1.102 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.57 48.0 3.16e-01 96.6% 25.3%
3706236 327.6.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like 0.56 43.0 4.37e-01 94.9% 86.7%
169836 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 46.0 3.53e-01 98.3% 38.5%
4955342 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 46.0 3.30e-01 93.2% 74.1%
4947038 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.55 44.0 4.23e-01 93.2% 74.3%
5050628 2006.1.6.21 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_CoxE 0.55 41.0 2.88e-01 84.7% 43.1%
3588389 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.55 44.0 3.29e-01 94.9% 54.3%
3598371 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 42.0 3.02e-01 88.1% 43.2%
3359920 2004.1.1.47 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › G-alpha 0.54 43.0 3.33e-01 93.2% 37.2%
1806508 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 36.0 3.86e-01 98.3% 82.0%
3272131 7579.1.1.71 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DDHD 0.54 42.0 2.85e-01 89.8% 50.4%
3601076 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.53 42.0 2.92e-01 86.4% 27.7%
4930590 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.53 44.0 3.46e-01 96.6% 46.7%
2575369 7575.1.1.1 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14 0.52 43.0 3.40e-01 98.3% 45.3%
4300482 301.2.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like 0.52 43.0 3.03e-01 96.6% 67.4%
3660842 2004.1.1.530 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, AAA_lid_3 0.51 43.0 2.66e-01 100.0% 30.5%
D2 medium residues 6-90
PDB
Domain cluster: rep: MZ234008.1__QZI78371.1__22664B1_012__00012__D9-90
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.69 42.0 4.07e-01 100.0% 53.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3781047 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.81 48.0 5.57e-01 97.6% 83.3%
3935045 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 51.0 5.52e-01 95.3% 85.7%
3616699 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 44.0 4.79e-01 88.2% 84.3%
3282419 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.65 54.0 4.86e-01 89.4% 72.2%
3422502 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.60 48.0 4.51e-01 85.9% 89.5%
4940719 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 52.0 4.24e-01 100.0% 58.8%
4890012 2484.1.1.209 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › IN_DBD_C 0.56 31.0 2.76e-01 90.6% 35.1%
3590178 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.55 47.0 3.26e-01 95.3% 91.7%
3200614 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.54 42.0 3.75e-01 83.5% 97.5%
4952712 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 27.0 2.95e-01 87.1% 54.8%
5004937 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.52 36.0 2.65e-01 71.8% 62.1%
3212583 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.51 39.0 3.74e-01 82.4% 99.0%