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IMGVR_UViG_3300009506_002491-3300009506-Ga0118657_100382375

Arc-Vir

IMGVR_UViG_3300009506_002491-3300009506-Ga0118657_100382375

Identity

Kingdom:
archaea

Quality

73.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-87
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2joeA01 3.30.1830.10 Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like 0.68 51.0 4.47e-01 80.0% 99.2%
1mgtA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.65 45.0 4.44e-01 70.6% 78.4%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.64 52.0 5.47e-01 98.8% 100.0%
2qq6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 45.0 4.08e-01 76.5% 99.1%
3jclA01 2.60.120.960 Mainly Beta › Sandwich › Jelly Rolls › Spike glycoprotein, N-terminal domain 0.60 51.0 3.60e-01 95.3% 64.5%
1vl4A01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.60 46.0 3.49e-01 82.4% 65.4%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.59 34.0 3.88e-01 82.4% 78.7%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 50.0 4.34e-01 100.0% 83.3%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.56 46.0 3.93e-01 94.1% 87.7%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.55 47.0 3.46e-01 100.0% 97.8%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.93e-01 81.2% 83.5%
3qtdA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.55 42.0 3.14e-01 83.5% 62.7%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 4.06e-01 82.4% 83.9%
1vpbA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.55 41.0 3.10e-01 81.2% 63.1%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.69e-01 81.2% 74.8%
3dasA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 46.0 3.18e-01 100.0% 94.0%
5adxA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 43.0 3.55e-01 91.8% 87.7%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.54e-01 81.2% 71.8%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 38.0 3.42e-01 76.5% 59.7%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 42.0 3.62e-01 97.6% 57.4%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 35.0 3.29e-01 71.8% 81.3%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3529047 633.23.1.4 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.67 53.0 3.87e-01 84.7% 74.2%
3857670 633.23.1.35 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 0.66 52.0 3.86e-01 84.7% 67.9%
1034013 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.64 52.0 5.43e-01 100.0% 98.7%
1692496 58.2.1.1 ↗ beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain › LigD_N 0.64 57.0 4.58e-01 100.0% 88.2%
5013176 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.63 49.0 5.18e-01 82.4% 100.0%
998899 58.2.1.1 ↗ beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain › LigD_N 0.63 54.0 4.86e-01 94.1% 83.1%
4941490 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 41.0 3.48e-01 100.0% 45.9%
3709821 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 43.0 3.86e-01 81.2% 85.6%
5069973 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 44.0 3.45e-01 83.5% 70.0%
3250807 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 43.0 3.35e-01 83.5% 78.0%
5023142 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.56 43.0 3.27e-01 82.4% 62.0%
3553623 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.56 40.0 3.63e-01 77.6% 64.0%
5010246 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.56 42.0 3.33e-01 81.2% 60.6%
5082957 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.56 48.0 3.38e-01 98.8% 95.4%
3991560 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 41.0 4.02e-01 81.2% 88.4%
3929729 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 44.0 3.39e-01 87.1% 75.4%
5030570 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 43.0 3.48e-01 84.7% 78.2%
4208156 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.54 40.0 3.28e-01 81.2% 65.3%
3740897 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.53 45.0 3.12e-01 98.8% 95.5%
5081724 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 41.0 3.19e-01 84.7% 77.5%
3593635 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.73e-01 82.4% 81.8%
3482223 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 36.0 2.35e-01 71.8% 39.1%
3252283 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 40.0 3.56e-01 82.4% 77.6%
3518268 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.47e-01 82.4% 80.7%
4970708 3662.1.1.0 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.53 39.0 3.59e-01 80.0% 97.4%
3250619 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.67e-01 81.2% 85.5%
3253113 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.52 38.0 3.52e-01 80.0% 69.6%
3514491 5.1.4.242 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.52 44.0 2.93e-01 98.8% 65.4%
3167601 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.52 36.0 3.55e-01 74.1% 76.8%
3254948 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 39.0 3.04e-01 84.7% 80.9%
5043543 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 36.0 2.59e-01 72.9% 38.1%
5037589 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 3.00e-01 100.0% 89.3%
3609378 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 38.0 3.73e-01 81.2% 87.4%
3786775 109.54.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.51 44.0 2.76e-01 100.0% 61.9%
4030718 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.43e-01 80.0% 83.3%
3530259 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.51 39.0 3.55e-01 82.4% 74.8%
3919606 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.51 38.0 2.91e-01 81.2% 45.7%
3744032 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 39.0 3.31e-01 83.5% 57.9%
3797707 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 38.0 3.33e-01 81.2% 59.3%