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IMGVR_UViG_3300009509_000440-3300009509-Ga0123573_100313214

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300009509_000440-3300009509-Ga0123573_100313214 ↗
Kingdom:: archaea

Quality

64.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 115-221

PDB

Domain cluster: representative

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1mabG00	1.10.287.80	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain	0.68	40.0	3.86e-01	96.3%	50.0%
3cxbA03	1.10.1740.30	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain	0.68	46.0	5.19e-01	70.1%	100.0%
1w2wA00	1.20.120.420	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1	0.65	46.0	3.68e-01	72.9%	79.0%
2dkwA00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.58	40.0	3.78e-01	72.0%	62.6%
2a6hF01	1.20.120.1810	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.56	40.0	3.42e-01	74.8%	45.4%
3nkeA00	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.56	39.0	3.28e-01	72.0%	64.5%
3rrkA02	1.20.1460.20	Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 ›	0.55	42.0	3.70e-01	80.4%	60.0%
7e84A03	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.53	43.0	4.11e-01	86.0%	76.4%
4gx0A01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.53	37.0	3.81e-01	82.2%	75.7%
5f7vA00	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.52	36.0	2.51e-01	71.0%	65.2%
3vouB00	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.51	35.0	3.21e-01	93.5%	55.1%
4acyA00	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.51	37.0	2.67e-01	76.6%	88.0%
3spcA02	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.50	36.0	3.45e-01	74.8%	63.0%
2icwG01	1.20.120.390	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1	0.50	36.0	3.46e-01	73.8%	71.0%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4278712	5058.1.1.16 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1	0.74	36.0	3.70e-01	83.2%	47.6%
3288147	142.1.1.3 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2	0.65	45.0	4.68e-01	72.0%	79.0%
4012049	874.1.1.0 ↗	a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain	0.65	35.0	3.38e-01	80.4%	44.8%
4438101	161.1.1.1 ↗	alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW	0.64	47.0	3.89e-01	77.6%	100.0%
4963649	3755.1.1.0 ↗	alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related	0.60	43.0	3.07e-01	98.1%	25.9%
5042372	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.58	39.0	3.99e-01	73.8%	70.2%
4938196	5054.1.1.6 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH	0.58	33.0	3.41e-01	70.1%	57.1%
3372166	632.7.1.1 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70	0.55	46.0	2.97e-01	87.9%	75.7%
3229358	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.55	44.0	3.78e-01	83.2%	100.0%
3395749	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.54	36.0	3.31e-01	77.6%	53.3%
3377897	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.54	47.0	3.05e-01	100.0%	27.6%
353472	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.53	40.0	3.95e-01	84.1%	73.9%
4392843	1037.1.1.1 ↗	alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT	0.52	47.0	3.29e-01	97.2%	100.0%
3510185	3227.1.1.1 ↗	alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC	0.50	37.0	2.56e-01	78.5%	31.2%
3517154	4156.1.1.4 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C	0.50	36.0	3.32e-01	77.6%	57.1%