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IMGVR_UViG_3300009518_000014-3300009518-Ga0116128_100031524

Arc-Vir

IMGVR_UViG_3300009518_000014-3300009518-Ga0116128_100031524

Quality

82.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 197-279
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w31A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.77 56.0 4.50e-01 74.7% 88.8%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.76 54.0 4.37e-01 73.5% 92.6%
3k2jA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.72 60.0 5.25e-01 90.4% 95.0%
5ko4A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.72 58.0 5.41e-01 86.7% 100.0%
5n17A01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.71 58.0 5.36e-01 88.0% 100.0%
3ajfA00 1.20.1440.190 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tenuivirus movement protein 0.69 48.0 4.69e-01 73.5% 90.2%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.68 39.0 3.88e-01 97.6% 54.0%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.67 57.0 5.21e-01 98.8% 100.0%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.66 45.0 4.11e-01 71.1% 91.1%
5c8gB00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.66 56.0 5.03e-01 95.2% 89.7%
3iu5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.65 56.0 5.07e-01 97.6% 98.2%
2wcrB00 3.10.129.140 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein 0.64 48.0 3.98e-01 79.5% 95.2%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.64 44.0 4.17e-01 71.1% 91.8%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 50.0 5.10e-01 86.7% 98.7%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 44.0 3.96e-01 72.3% 70.2%
2kobA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.62 50.0 4.89e-01 90.4% 93.5%
2e8gA01 1.20.1440.150 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.62 45.0 4.01e-01 78.3% 86.3%
3zbhA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 37.0 3.67e-01 90.4% 55.6%
3mvcB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 53.0 4.40e-01 100.0% 81.2%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.61 48.0 4.37e-01 86.7% 93.9%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.60 51.0 5.07e-01 94.0% 91.9%
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 51.0 3.84e-01 94.0% 42.4%
3sqiA01 1.10.150.540 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.60 45.0 4.31e-01 81.9% 78.8%
4u2vA02 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.59 38.0 3.89e-01 72.3% 67.5%
1wlmA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 49.0 4.62e-01 94.0% 95.1%
4rfsS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.58 47.0 3.71e-01 91.6% 70.6%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 43.0 3.66e-01 97.6% 50.0%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 44.0 4.01e-01 86.7% 100.0%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 49.0 4.24e-01 98.8% 82.8%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.57 46.0 3.96e-01 91.6% 72.7%
3d1bB00 1.20.920.40 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.57 45.0 4.20e-01 88.0% 100.0%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.56 43.0 4.61e-01 90.4% 100.0%
4xxiA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.56 48.0 4.07e-01 98.8% 69.4%
3aq5A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 48.0 4.28e-01 96.4% 80.3%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 37.0 3.75e-01 71.1% 96.5%
1dlwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 48.0 4.29e-01 97.6% 81.9%
4unfA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.54 41.0 3.77e-01 84.3% 62.4%
1ysyA00 1.10.8.370 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › nsp7 replicase 0.53 42.0 4.23e-01 86.7% 90.6%
4akgA14 1.20.1280.160 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 38.0 3.51e-01 74.7% 97.2%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 47.0 4.28e-01 95.2% 81.7%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 47.0 4.23e-01 95.2% 82.0%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.53 42.0 4.27e-01 90.4% 98.8%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.53 37.0 3.54e-01 73.5% 77.8%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 41.0 3.42e-01 86.7% 61.2%
3pe0A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 39.0 3.73e-01 81.9% 86.1%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 41.0 3.88e-01 89.2% 97.1%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 41.0 3.56e-01 97.6% 87.9%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3284117 106.1.1.11 alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.75 52.0 4.40e-01 72.3% 97.0%
4971640 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 57.0 3.64e-01 86.7% 20.8%
4016255 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.70 48.0 3.42e-01 71.1% 74.7%
4609205 2002.1.1.41 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase 0.70 61.0 3.93e-01 94.0% 98.0%
3609850 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.69 48.0 3.52e-01 71.1% 83.4%
3595902 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.69 47.0 3.50e-01 71.1% 85.5%
143057 3825.1.1.1 alpha arrays › Non-structural protein 3 › Non-structural protein 3 › Non-structural protein 3 › Tenui_NS3 0.69 48.0 4.69e-01 73.5% 90.2%
3938942 3198.1.1.1 alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA 0.68 53.0 4.62e-01 83.1% 59.2%
3621979 3198.1.1.1 alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA 0.67 52.0 4.63e-01 83.1% 63.3%
4991188 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.67 53.0 3.47e-01 84.3% 22.4%
5078022 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.65 55.0 5.58e-01 96.4% 98.8%
3542152 397.7.1.7 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › BSMAP 0.64 48.0 4.67e-01 78.3% 95.6%
4257906 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.63 54.0 5.33e-01 97.6% 98.9%
4485359 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.63 54.0 5.24e-01 97.6% 88.4%
3621977 3198.1.1.1 alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA 0.62 49.0 4.40e-01 84.3% 64.3%
4927987 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.62 50.0 3.46e-01 91.6% 29.5%
5044421 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.61 45.0 4.60e-01 77.1% 93.8%
4068227 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.61 46.0 3.19e-01 83.1% 28.7%
2320584 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.61 51.0 4.90e-01 96.4% 93.8%
3661 633.10.1.1 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › 23S_rRNA_IVP 0.61 48.0 4.39e-01 86.7% 94.7%
5059308 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.60 52.0 3.83e-01 100.0% 66.1%
3243671 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 42.0 4.15e-01 74.7% 73.3%
3711198 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.60 42.0 4.23e-01 73.5% 77.6%
4003475 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.59 41.0 3.91e-01 72.3% 84.0%
3194922 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.58 49.0 4.07e-01 96.4% 59.5%
3941216 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.58 45.0 4.15e-01 86.7% 93.0%
3731299 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.58 45.0 3.45e-01 86.7% 90.5%
3438212 601.1.1.54 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF4220 0.58 48.0 3.94e-01 90.4% 86.7%
3902628 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.57 44.0 3.20e-01 83.1% 75.3%
3290961 106.1.1.11 alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.56 50.0 4.07e-01 98.8% 72.9%
3395332 2006.1.1.36 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Put_Phosphatase 0.56 46.0 3.40e-01 94.0% 42.5%
3948171 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.56 47.0 4.23e-01 89.2% 93.6%
3713912 633.21.1.22 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › COPI_assoc 0.56 44.0 4.01e-01 90.4% 100.0%
3516444 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.54 37.0 3.98e-01 96.4% 87.1%
3277797 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.53 33.0 3.38e-01 90.4% 63.7%
3808289 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 39.0 3.74e-01 92.8% 69.5%
4331401 3281.1.1.1 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.51 42.0 2.72e-01 98.8% 66.1%
D2 medium residues 1-188
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06067.17 best DUF932 47.0 3.80e-12 71.8% 57.7%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.56 40.0 4.43e-01 92.0% 92.4%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.54 28.0 3.00e-01 84.6% 55.0%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.53 38.0 4.22e-01 92.0% 92.5%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.53 29.0 3.77e-01 91.0% 95.1%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.52 30.0 3.16e-01 98.4% 58.8%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.51 26.0 3.23e-01 84.0% 78.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3694785 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.63 46.0 4.47e-01 94.7% 66.5%
3990957 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.57 39.0 4.50e-01 87.8% 96.3%
3460934 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.55 36.0 3.54e-01 94.1% 61.1%
5075730 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.55 34.0 4.15e-01 90.4% 98.3%
3978258 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 26.0 3.70e-01 88.3% 93.5%
4466411 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.54 40.0 4.12e-01 92.6% 81.1%