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IMGVR_UViG_3300009518_000014-3300009518-Ga0116128_10003158
Arc-VirIMGVR_UViG_3300009518_000014-3300009518-Ga0116128_10003158
Identity
- Kingdom:
- archaea
Quality
74.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-74
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.87 | 73.0 | 6.61e-01 | 90.3% | 70.4% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.83 | 69.0 | 6.94e-01 | 100.0% | 91.8% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 74.0 | 7.17e-01 | 100.0% | 88.4% |
| 6f1eA01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.82 | 51.0 | 3.82e-01 | 79.0% | 28.1% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.81 | 63.0 | 6.52e-01 | 93.5% | 89.7% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.81 | 59.0 | 6.42e-01 | 82.3% | 96.1% |
| 6r1nA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.79 | 70.0 | 5.95e-01 | 100.0% | 68.9% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.79 | 70.0 | 5.86e-01 | 100.0% | 59.4% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 67.0 | 6.21e-01 | 100.0% | 74.4% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.79 | 59.0 | 6.09e-01 | 96.8% | 84.7% |
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.78 | 69.0 | 5.65e-01 | 100.0% | 58.8% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.78 | 67.0 | 6.47e-01 | 96.8% | 85.9% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 68.0 | 6.11e-01 | 100.0% | 75.0% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.78 | 62.0 | 6.33e-01 | 88.7% | 98.3% |
| 2jdiG01 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.78 | 66.0 | 6.65e-01 | 96.8% | 96.7% |
| 6vq6G02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.77 | 67.0 | 4.74e-01 | 100.0% | 32.6% |
| 2q5zB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.77 | 59.0 | 5.17e-01 | 83.9% | 63.8% |
| 1ma1A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.76 | 63.0 | 6.30e-01 | 96.8% | 90.6% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.75 | 63.0 | 6.26e-01 | 93.5% | 93.8% |
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 65.0 | 6.16e-01 | 100.0% | 83.8% |
| 3na7A00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 64.0 | 4.35e-01 | 100.0% | 46.4% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.74 | 65.0 | 5.84e-01 | 100.0% | 70.9% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 61.0 | 6.26e-01 | 95.2% | 100.0% |
| 3gnlB02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 55.0 | 5.42e-01 | 82.3% | 75.0% |
| 4ijjB00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.73 | 62.0 | 4.98e-01 | 100.0% | 46.9% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.73 | 62.0 | 5.92e-01 | 96.8% | 82.2% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 63.0 | 6.29e-01 | 100.0% | 100.0% |
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 61.0 | 5.82e-01 | 100.0% | 80.5% |
| 3lnnB03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 60.0 | 5.88e-01 | 100.0% | 88.1% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 61.0 | 6.29e-01 | 93.5% | 100.0% |
| 1zkeA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 61.0 | 5.65e-01 | 96.8% | 97.5% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.69 | 52.0 | 5.19e-01 | 82.3% | 81.5% |
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.69 | 53.0 | 5.43e-01 | 87.1% | 90.2% |
| 4kn7D01 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.67 | 52.0 | 4.13e-01 | 91.9% | 39.8% |
| 3bhnA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.67 | 60.0 | 4.09e-01 | 100.0% | 48.8% |
| 1v9vA01 | 1.20.1480.20 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like | 0.66 | 50.0 | 4.48e-01 | 85.5% | 56.8% |
| 2uv8A07 | 6.10.140.1410 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 54.0 | 4.89e-01 | 95.2% | 65.9% |
| 2vkzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.66 | 54.0 | 3.55e-01 | 95.2% | 21.4% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 53.0 | 5.51e-01 | 90.3% | 96.5% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 44.0 | 4.26e-01 | 77.4% | 93.0% |
| 4q5qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 49.0 | 4.20e-01 | 95.2% | 57.1% |
| 4m52A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 52.0 | 3.51e-01 | 100.0% | 91.4% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 141918 | 101.1.2.49 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C | 0.87 | 73.0 | 5.18e-01 | 90.3% | 33.5% |
| 4274331 | 5044.1.1.1 ↗ | extended segments › PsbZ-like › PsbZ-like › PsbZ-like › Ycf9 | 0.85 | 67.0 | 6.86e-01 | 83.9% | 98.3% |
| 3192159 | 4207.1.2.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region | 0.85 | 76.0 | 6.25e-01 | 100.0% | 58.2% |
| 4762 | 5044.1.1.1 ↗ | extended segments › PsbZ-like › PsbZ-like › PsbZ-like › Ycf9 | 0.82 | 69.0 | 6.94e-01 | 100.0% | 91.9% |
| 4267909 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.82 | 73.0 | 5.09e-01 | 100.0% | 96.9% |
| 4070494 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.81 | 73.0 | 4.37e-01 | 100.0% | 17.2% |
| 3197615 | 3755.3.1.355 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Uds1 | 0.80 | 71.0 | 5.65e-01 | 100.0% | 70.4% |
| 4959390 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.80 | 70.0 | 6.75e-01 | 98.4% | 88.6% |
| 3780651 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.80 | 66.0 | 6.57e-01 | 100.0% | 86.2% |
| 3972622 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.80 | 71.0 | 6.05e-01 | 100.0% | 66.0% |
| 3924037 | 632.11.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DOCK_N | 0.79 | 59.0 | 5.11e-01 | 80.6% | 52.6% |
| 4072921 | 192.5.1.20 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › Val_tRNA-synt_C | 0.78 | 71.0 | 6.84e-01 | 100.0% | 91.3% |
| 3644495 | 7022.1.1.0 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein | 0.78 | 69.0 | 5.46e-01 | 98.4% | 48.8% |
| 3382780 | 2006.1.1.8 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5_nucleotid | 0.78 | 68.0 | 4.24e-01 | 100.0% | 18.9% |
| 2518028 | 5044.1.1.1 ↗ | extended segments › PsbZ-like › PsbZ-like › PsbZ-like › Ycf9 | 0.78 | 67.0 | 6.74e-01 | 96.8% | 100.0% |
| 3974625 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.78 | 67.0 | 6.49e-01 | 98.4% | 92.9% |
| 4013672 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.77 | 70.0 | 5.93e-01 | 100.0% | 63.0% |
| 4574972 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.77 | 65.0 | 6.66e-01 | 100.0% | 100.0% |
| 5008490 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.76 | 65.0 | 5.80e-01 | 98.4% | 67.0% |
| 3550353 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.76 | 64.0 | 6.35e-01 | 96.8% | 93.8% |
| 5014387 | 3826.1.1.100 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF2304 | 0.74 | 56.0 | 5.04e-01 | 80.6% | 58.8% |
| 3220596 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.73 | 62.0 | 5.19e-01 | 100.0% | 55.7% |
| 3803573 | 7022.1.1.0 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein | 0.72 | 61.0 | 4.27e-01 | 98.4% | 28.4% |
| 5040466 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.71 | 56.0 | 5.33e-01 | 87.1% | 75.7% |
| 4463998 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.71 | 52.0 | 3.25e-01 | 79.0% | 17.6% |
| 3283349 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.71 | 56.0 | 4.55e-01 | 91.9% | 44.8% |
| 2831866 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.68 | 56.0 | 4.67e-01 | 100.0% | 50.4% |