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IMGVR_UViG_3300009518_000063-3300009518-Ga0116128_100071213

Arc-Vir

IMGVR_UViG_3300009518_000063-3300009518-Ga0116128_100071213

Quality

78.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 19-54_68-87
PDB
Domain cluster: representative
D2 medium residues 88-181_336-355_482-533
PDB
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.53 23.0 3.04e-01 98.2% 72.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965223 3121.1.1.5 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_3 0.51 24.0 3.30e-01 79.5% 92.0%
3913149 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.51 29.0 3.03e-01 88.6% 59.3%
3520104 3121.1.1.0 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.50 23.0 3.22e-01 81.9% 88.7%
D3 medium residues 262-300
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 40.0 3.66e-01 76.9% 61.4%
5hwoA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.57 42.0 2.48e-01 92.3% 96.4%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 39.0 3.61e-01 76.9% 57.9%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1828829 7581.1.1.11 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › HMG_CoA_synt_C 0.56 42.0 2.67e-01 92.3% 19.0%
D4 medium residues 356-447
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.62 30.0 2.71e-01 84.8% 36.1%
1jqjC02 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.53 38.0 3.78e-01 92.4% 71.9%
1v2xA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.51 37.0 3.00e-01 77.2% 96.9%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3625874 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.76 46.0 4.01e-01 100.0% 41.5%
3404650 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.63 29.0 2.38e-01 92.4% 26.2%
4618841 2002.1.1.13 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.55 34.0 2.30e-01 95.7% 17.3%
3400659 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.54 25.0 2.07e-01 91.3% 24.8%
3167096 109.4.1.628 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS 0.52 43.0 2.58e-01 92.4% 22.6%